Man pages for SimonSchafferer/custom-neuro-ncRNA-microarray
Custom microarray analysis package
| addProbeTypeAndChipTypeToRGGenes | Adds the probe and chipType to the RG$genes table based on... |
| calcMeanValueOfSpots | Calculates the mean or median value of the spots on a chip by... |
| calcTS | Calculates the optimal table size for displaying a data.frame... |
| createGVisTableFromDF | Calculates the optimal table size for displaying a data.frame... |
| extractNetIntensityValues | Extracts the Net Intensity Values by the identfier: Net... |
| filterSpotsBySpikeIn | Filtering of spot values by the condition PM > MM and spot... |
| loadLibraryAs | Loads a R object with a given name into a desired environment |
| modifyAnalysis | Modifies the analysis Template |
| normalizeTwoColorArray | Normalizes a RG object by a given method (eather vsn or... |
| orderTwoColorArray | Order by a given name |
| performAnalysis1_0 | Perform an analysis on the First 1.0 chip |
| performAnalysis2_0 | Perform an analysis on the Second 2.0 chip |
| performAnalysis2_1 | Perform an analysis on the 2.1 chip |
| performDiffExpAnalysis | Performs a differential expression analysis via limma |
| plotBoxDensityFromRG | A plot is created as a combination of Boxplot and Density... |
| plotMAofArrays | This function creates a ggplot object where MA plots of all... |
| readAndProcessChipData | Reads and processes the gpr files of two channel arrays.... |
| readAndProcessChipData2_1 | Reads and processes the gpr files of two channel arrays For... |
| readAndProcessChipDataFirstChip | Reads and processes the gpr files of two channel arrays.... |
