readAndProcessChipData: Reads and processes the gpr files of two channel arrays....

Description Usage Arguments Value

Description

Reads and processes the gpr files of two channel arrays. Attention changes commas to dots of the names in the first chip

Usage

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readAndProcessChipData(currDir, specificationFile = "samplesInfo.txt",
  source = "genepix", na.strings = "<NO DATA>", columns, otherColumns,
  GALFile, ...)

Arguments

currDir

directory were the file is read in

specificationFile

Text file in the directory of the gpr files were the gpr file is specified

source

Source of the Laser Scanner

na.strings

The Name of the spots without informatio or data (as defined by the scanning software)

columns

custom column Names

otherColumns

Additional columns

GALFile

the GAL file of the chip

Value

List containing an annotated data frame a target data.frame and the RG object


SimonSchafferer/custom-neuro-ncRNA-microarray documentation built on May 9, 2019, 1:45 p.m.