readAndProcessChipData: Reads and processes the gpr files of two channel arrays....

In SimonSchafferer/custom-neuro-ncRNA-microarray: Custom microarray analysis package

Description

Reads and processes the gpr files of two channel arrays. Attention changes commas to dots of the names in the first chip

Usage

readAndProcessChipData(currDir, specificationFile = "samplesInfo.txt",
  source = "genepix", na.strings = "<NO DATA>", columns, otherColumns,
  GALFile, ...)

Arguments

currDir	directory were the file is read in
specificationFile	Text file in the directory of the gpr files were the gpr file is specified
source	Source of the Laser Scanner
na.strings	The Name of the spots without informatio or data (as defined by the scanning software)
columns	custom column Names
otherColumns	Additional columns
GALFile	the GAL file of the chip

Value

List containing an annotated data frame a target data.frame and the RG object

SimonSchafferer/custom-neuro-ncRNA-microarray documentation built on May 9, 2019, 1:45 p.m.