Man pages for SimonSchafferer/custom-neuro-ncRNA-microarray
Custom microarray analysis package

addProbeTypeAndChipTypeToRGGenesAdds the probe and chipType to the RG$genes table based on...
calcMeanValueOfSpotsCalculates the mean or median value of the spots on a chip by...
calcTSCalculates the optimal table size for displaying a data.frame...
createGVisTableFromDFCalculates the optimal table size for displaying a data.frame...
extractNetIntensityValuesExtracts the Net Intensity Values by the identfier: Net...
filterSpotsBySpikeInFiltering of spot values by the condition PM > MM and spot...
loadLibraryAsLoads a R object with a given name into a desired environment
modifyAnalysisModifies the analysis Template
normalizeTwoColorArrayNormalizes a RG object by a given method (eather vsn or...
orderTwoColorArrayOrder by a given name
performAnalysis1_0Perform an analysis on the First 1.0 chip
performAnalysis2_0Perform an analysis on the Second 2.0 chip
performAnalysis2_1Perform an analysis on the 2.1 chip
performDiffExpAnalysisPerforms a differential expression analysis via limma
plotBoxDensityFromRGA plot is created as a combination of Boxplot and Density...
plotMAofArraysThis function creates a ggplot object where MA plots of all...
readAndProcessChipDataReads and processes the gpr files of two channel arrays....
readAndProcessChipData2_1Reads and processes the gpr files of two channel arrays For...
readAndProcessChipDataFirstChipReads and processes the gpr files of two channel arrays....
SimonSchafferer/custom-neuro-ncRNA-microarray documentation built on May 9, 2019, 1:45 p.m.