Description Usage Arguments Value
Performs a differential expression analysis via limma
1 2 | performDiffExpAnalysis(MA, aveDups = FALSE, design = NULL, block = NULL,
blockpairs = 2, ndups = 4, spacing = 1)
|
MA |
An object of type MAList |
aveDups |
The number of duplicated spots in the MA object |
design |
Design of the experiment (if null, a dye swap design is considered (1,-1,1,-1,...)) |
block |
Blocking vector |
blockpairs |
For creation of a default blocking vector (default creation would be 1,1,2,2,...) |
ndups |
Number of duplicated spots |
spacing |
If spacing is not defined a sorted MA object is considered |
List containing a resulting Table from eBayes, the model fit and the fit after eBayes
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