performDiffExpAnalysis: Performs a differential expression analysis via limma

Description Usage Arguments Value

Description

Performs a differential expression analysis via limma

Usage

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performDiffExpAnalysis(MA, aveDups = FALSE, design = NULL, block = NULL,
  blockpairs = 2, ndups = 4, spacing = 1)

Arguments

MA

An object of type MAList

aveDups

The number of duplicated spots in the MA object

design

Design of the experiment (if null, a dye swap design is considered (1,-1,1,-1,...))

block

Blocking vector

blockpairs

For creation of a default blocking vector (default creation would be 1,1,2,2,...)

ndups

Number of duplicated spots

spacing

If spacing is not defined a sorted MA object is considered

Value

List containing a resulting Table from eBayes, the model fit and the fit after eBayes


SimonSchafferer/custom-neuro-ncRNA-microarray documentation built on May 9, 2019, 1:45 p.m.