Files in SimoneTiberi/DifferentialRegulation
Differentially regulated genes from scRNA-seq data
.gitignore
DESCRIPTION
NAMESPACE
NEWS
R/DifferentialRegulation.R
R/DifferentialRegulation_bulk.R
R/MCMC_ECs.R
R/MCMC_bulk_EC.R
R/MCMC_functions.R
R/RcppExports.R
R/compute_PB_counts.R
R/load_EC.R
R/load_USA.R
R/load_bulk_EC.R
R/load_bulk_US.R
R/plot_bulk_pi.R
R/plot_bulk_traceplot.R
R/plot_pi.R
R/plot_traceplot.R
R/roxygen_tags.R
README.md
inst/CITATION
inst/extdata/DF_cell_types.txt
inst/extdata/DifferentialRegulation.png
inst/extdata/alevin-fry/organoid1/alevin/gene_eqclass.txt.gz
inst/extdata/alevin-fry/organoid1/alevin/geqc_counts.mtx
inst/extdata/alevin-fry/organoid1/alevin/quants_mat.mtx
inst/extdata/alevin-fry/organoid1/alevin/quants_mat_cols.txt
inst/extdata/alevin-fry/organoid1/alevin/quants_mat_rows.txt
inst/extdata/alevin-fry/organoid16/alevin/gene_eqclass.txt.gz
inst/extdata/alevin-fry/organoid16/alevin/geqc_counts.mtx
inst/extdata/alevin-fry/organoid16/alevin/quants_mat.mtx
inst/extdata/alevin-fry/organoid16/alevin/quants_mat_cols.txt
inst/extdata/alevin-fry/organoid16/alevin/quants_mat_rows.txt
inst/extdata/alevin-fry/organoid17/alevin/gene_eqclass.txt.gz
inst/extdata/alevin-fry/organoid17/alevin/geqc_counts.mtx
inst/extdata/alevin-fry/organoid17/alevin/quants_mat.mtx
inst/extdata/alevin-fry/organoid17/alevin/quants_mat_cols.txt
inst/extdata/alevin-fry/organoid17/alevin/quants_mat_rows.txt
inst/extdata/alevin-fry/organoid18/alevin/gene_eqclass.txt.gz
inst/extdata/alevin-fry/organoid18/alevin/geqc_counts.mtx
inst/extdata/alevin-fry/organoid18/alevin/quants_mat.mtx
inst/extdata/alevin-fry/organoid18/alevin/quants_mat_cols.txt
inst/extdata/alevin-fry/organoid18/alevin/quants_mat_rows.txt
inst/extdata/alevin-fry/organoid2/alevin/gene_eqclass.txt.gz
inst/extdata/alevin-fry/organoid2/alevin/geqc_counts.mtx
inst/extdata/alevin-fry/organoid2/alevin/quants_mat.mtx
inst/extdata/alevin-fry/organoid2/alevin/quants_mat_cols.txt
inst/extdata/alevin-fry/organoid2/alevin/quants_mat_rows.txt
inst/extdata/alevin-fry/organoid3/alevin/gene_eqclass.txt.gz
inst/extdata/alevin-fry/organoid3/alevin/geqc_counts.mtx
inst/extdata/alevin-fry/organoid3/alevin/quants_mat.mtx
inst/extdata/alevin-fry/organoid3/alevin/quants_mat_cols.txt
inst/extdata/alevin-fry/organoid3/alevin/quants_mat_rows.txt
inst/extdata/salmon/sample1/aux_info/eq_classes.txt.gz
inst/extdata/salmon/sample1/quant.sf
inst/extdata/salmon/sample2/aux_info/eq_classes.txt.gz
inst/extdata/salmon/sample2/quant.sf
inst/extdata/salmon/sample3/aux_info/eq_classes.txt.gz
inst/extdata/salmon/sample3/quant.sf
inst/extdata/salmon/sample4/aux_info/eq_classes.txt.gz
inst/extdata/salmon/sample4/quant.sf
inst/extdata/salmon/sample5/aux_info/eq_classes.txt.gz
inst/extdata/salmon/sample5/quant.sf
inst/extdata/salmon/sample6/aux_info/eq_classes.txt.gz
inst/extdata/salmon/sample6/quant.sf
inst/script/extdata.Rmd
man/DifferentialRegulation-package.Rd
man/DifferentialRegulation.Rd
man/DifferentialRegulation_bulk.Rd
man/compute_PB_counts.Rd
man/load_EC.Rd
man/load_USA.Rd
man/load_bulk_EC.Rd
man/load_bulk_US.Rd
man/plot_bulk_pi.Rd
man/plot_bulk_traceplot.Rd
man/plot_pi.Rd
man/plot_traceplot.Rd
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/Rcpp_MCMC.cpp
src/Rcpp_MCMC_EC_US.cpp
tests/testhat.R
tests/testthat/test-load_EC.R
tests/testthat/test-load_USA.R
tests/testthat/test-load_bulk_EC.R
tests/testthat/test-load_bulk_US.R
vignettes/DifferentialRegulation.Rmd
vignettes/References.bib
