API for Snitkin-Lab-Umich/snitkitr
Functions Commonly Used in the Snitkin Lab
| Global functions | |
|---|---|
| %>% | Man page |
| ConvertTimeToHours | Man page Source code |
| GetResourceUsage | Man page Source code |
| cdif_snp_allele_mat | Man page |
| cdif_snp_code_mat | Man page |
| cdif_tree | Man page |
| check_anc_rerefencing | Source code |
| check_is_this_class | Source code |
| check_is_tree | Source code |
| check_maj_rerefencing | Source code |
| check_ref_choice | Man page |
| check_setequal_tree_mat | Source code |
| check_tree_clustering | Man page Source code |
| check_tree_is_rooted | Source code |
| convert_code_to_binary | Man page |
| define_reference_alleles | Man page |
| get_anc_alleles | Man page |
| get_annotation_info | Man page |
| get_indel_info_from_annotations | Man page Source code |
| get_largest_subtree | Man page Source code |
| get_major_alleles | Source code |
| get_snp_info_from_annotations | Man page Source code |
| is_this_class | Source code |
| keep_sites_based_on_conf_logical | Man page |
| load_if_path | Man page |
| make_all_tree_edges_positive | Man page Source code |
| make_binary_matrix | Source code |
| parse_indels | Man page |
| parse_snp_or_indel | Man page |
| parse_snps | Man page |
| parsed_indel_cdif1 | Man page |
| parsed_indel_cdif3 | Man page |
| parsed_indel_cdif4 | Man page |
| parsed_indel_cdif5 | Man page |
| parsed_indel_cdif8 | Man page |
| parsed_snp_cdif1 | Man page |
| parsed_snp_cdif2 | Man page |
| parsed_snp_cdif3 | Man page |
| parsed_snp_cdif4 | Man page |
| parsed_snp_cdif5 | Man page |
| parsed_snp_cdif6 | Man page |
| parsed_snp_cdif7 | Man page |
| parsed_snp_cdif8 | Man page |
| remove_NA_rows | Man page |
| remove_alt_allele_code_from_split_rows | Man page |
| remove_rows_with_bugs | Source code |
| remove_rows_with_multiple_annots | Man page |
| remove_rows_with_no_variants_or_completely_masked | Man page |
| remove_snps | Man page |
| remove_snps_or_indel | Man page |
| remove_unknown_alleles | Source code |
| remove_unknown_anc | Man page |
| report_mat_type | Man page |
| reverse_list_str | Man page Source code |
| root_tree_og | Man page |
| split_rows_with_multiple_annots | Man page |
| standardize_row_and_col_names | Man page |
