remove_rows_with_multiple_annots: Remove any rows with multiple annotations
In Snitkin-Lab-Umich/snitkitr: Functions Commonly Used in the Snitkin Lab
Description
Usage
Arguments
Value
Description
- Bypass dealing with rows with multiple annotations (due to
overlapping genes or multiallelic sites) by removing them from the data.frame.
Useful especially as we are testing this function and the functionality to deal
with sites with multiple annotations is not ready.
Usage
1
remove_rows_with_multiple_annots(varmat)
Arguments
varmat
- data.frame where the rows are variants, the columns are genomes,
and the row.names are annotations
Value
Returns a varmat (class = data.frame) with all rows with multiple annotations
removed. Also writes a file called YEAR_MONTH_DATE_rows_with_multiple_annots_removed
indicating which rows were removed.
Snitkin-Lab-Umich/snitkitr documentation built on April 21, 2021, 10:48 a.m.
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Description Usage Arguments Value
Description
- Bypass dealing with rows with multiple annotations (due to overlapping genes or multiallelic sites) by removing them from the data.frame. Useful especially as we are testing this function and the functionality to deal with sites with multiple annotations is not ready.
Usage
1 | remove_rows_with_multiple_annots(varmat)
|
Arguments
varmat |
- data.frame where the rows are variants, the columns are genomes, and the row.names are annotations |
Value
Returns a varmat (class = data.frame) with all rows with multiple annotations removed. Also writes a file called YEAR_MONTH_DATE_rows_with_multiple_annots_removed indicating which rows were removed.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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