remove_snps_or_indel: Remove any row from an indel matrix that has the word SNP in...
In Snitkin-Lab-Umich/snitkitr: Functions Commonly Used in the Snitkin Lab
Description
Usage
Arguments
Value
Description
I found a row in one indel matrix that called a SNP, ex:
"No_protein_coding/intergenic_region_field_in_ANN SNP at 31494 > C
functional=NULL_NULL_NULL locus_tag=JBHKLKBP_00048 Strand Information:
JBHKLKBP_00048=+;C" - so this function will simply remove this from the indel
parsing pipeline.
Usage
1
remove_snps_or_indel(mat_type, mat)
Arguments
mat
matrix. Rows = variants, columns = samples.
Value
subset matrix
Snitkin-Lab-Umich/snitkitr documentation built on April 21, 2021, 10:48 a.m.
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Description Usage Arguments Value
Description
I found a row in one indel matrix that called a SNP, ex: "No_protein_coding/intergenic_region_field_in_ANN SNP at 31494 > C functional=NULL_NULL_NULL locus_tag=JBHKLKBP_00048 Strand Information: JBHKLKBP_00048=+;C" - so this function will simply remove this from the indel parsing pipeline.
Usage
1 | remove_snps_or_indel(mat_type, mat)
|
Arguments
mat |
matrix. Rows = variants, columns = samples. |
Value
subset matrix
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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