root_tree_og: Root tree on outgroup
In Snitkin-Lab-Umich/snitkitr: Functions Commonly Used in the Snitkin Lab
Description
Usage
Arguments
Value
Description
Root tree based on outgroup. If outgroup is null and the tree
isn't rooted, midpoint root tree. If tree is rooted, return tree as is.
Usage
1
root_tree_og(tree, outgroup = NULL)
Arguments
tree
phylogenetic tree or file path of tree
outgroup
tip name of outgroup in phylogeny. If NULL, midpoint root if
not rooted
Value
rooted tree without outgroup
Snitkin-Lab-Umich/snitkitr documentation built on April 21, 2021, 10:48 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
Description
Root tree based on outgroup. If outgroup is null and the tree isn't rooted, midpoint root tree. If tree is rooted, return tree as is.
Usage
1 | root_tree_og(tree, outgroup = NULL)
|
Arguments
tree |
phylogenetic tree or file path of tree |
outgroup |
tip name of outgroup in phylogeny. If NULL, midpoint root if not rooted |
Value
rooted tree without outgroup
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.