deepFilter: Filter the depmap annotation file for cell lines of interest.
In Solatar/setR:

Description Usage Arguments Value Examples

Filter the depmap annotation file for cell lines of interest.

deepFilter(
  DepMap_ID = NA,
  stripped_cell_line_name = NA,
  CCLE_Name = NA,
  alias = NA,
  COSMIC_ID = NA,
  lineage = NA,
  lineage_subtype = NA,
  lineage_sub_subtype = NA,
  lineage_molecular_subtype = NA,
  sex = NA,
  source = NA,
  Achilles_n_replicates = NA,
  max_cell_line_NNMD = NA,
  min_cell_line_NNMD = -Inf,
  culture_type = NA,
  culture_medium = NA,
  cas9_activity = NA,
  RRID = NA,
  sample_collection_site = NA,
  primary_or_metastasis = NA,
  disease = NA,
  disease_subtype = NA,
  ageMin = 0,
  ageMax = 200,
  Sanger_model_ID = NA,
  additional_info = NA
)

`DepMap_ID`	e.g. "ACH-000012"
`CCLE_Name`	e.g. "HCC827_LUNG"
`alias`	alias
`COSMIC_ID`	e.g. "1240146"
`lineage`	lineage, e.g. "leukemia" or "lung"
`lineage_subtype`	sublineage, e.g. "AML", "ALL", etc.
`lineage_sub_subtype`	Subsublineage
`lineage_molecular_subtype`	lineage molecular subtype
`sex`	either "Male" or "Female"
`source`	e.g. "Sanger", "DSMZ"
`Achilles_n_replicates`	minimum number of replicates
`culture_type`	mostly "Adherent" or "Suspension"
`culture_medium`	culture medium
`RRID`	e.g. "CVCL_0001"
`sample_collection_site`	e.g. "lung"
`primary_or_metastasis`	either "Primary" or "Metastasis"
`disease`	disease of the patient, e.g. "Lung Cancer"
`disease_subtype`	subdisease of the patient
`ageMin`	integer, minimum patient age
`ageMax`	integer, maximum patient age
`Sanger_model_ID`	e.g. "SIDM01067"
`additional_info`	additional information
`cell_line_name`	e.g. "HCC827"
`max_cell_line_NMMD`	negative number, NMD = nonsense-medieated mRNA decay
`min_cell_line_NMMD`	negative number, NMD = nonsense-medieated mRNA decay
`Cas9_activity`	minimum Cas9 activity, positive number

A data.frame where each row is a human cell line, and each column is a parameter of information about the cell line (e.g. ID, tissue, etc.). Note that terms are searched for with grepl, so use ^ and $ to determine ending and start if need be.