dmProt: proteome data

In Solatar/setR:

Description

Data from DepMap

Usage

data(dmProt)

Format

An object of class "cross"; see read.cross.

Details

Description from the DepMap website:

This is the core table of normalized protein expression data for all cell lines Quantitative profiling of thousands of proteins by mass spectrometry across 375 cell lines from the Gygi lab. The normalized protein quantitation data from https://gygi.med.harvard.edu/publications/ccle was imported into the portal. For more information about this dataset released in Nusinow et al., 2020, please see this supplemental guide.

Rows: cell lines (Broad IDs)

Columns: genes in the format: Symbol (UniProt)

This dataset contains the results for 375 cell lines.

Source

DepMap download page

Examples

data(dmProt)
dmProt[1:5,1:5]

Solatar/setR documentation built on Dec. 5, 2020, 10:50 p.m.