setNetGSEA: Creating an igraph from genes of interest and a list of gene...

Description Usage Arguments Details Value Examples

View source: R/setNet.R

Description

Imports: igraph, data.table,

Usage

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setNetGSEA(
  gsea,
  edgefactor = 1,
  spread = 1,
  vertexSize = 7,
  vertexShape = "pie",
  labelSize = 2,
  labelDistance = 1.7
)

Arguments

gsea

gsea object from function seekGSEA() from the seeqR package

spread

number, factor to expand the plot

vertexSize

number, regulates the size of the nodes/vertexes of the plot

vertexShape

character, either "pie" (default) or "none", circle", “square”, “csquare”, “rectangle” “crectangle”, “vrectangle”, “raster”, or “sphere”

Details

it is complicated

Value

prints a plot and outputs a list

Examples

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gsea <- seekGSEA(...)
setNetGSEA(gsea)

Solatar/setR documentation built on Dec. 5, 2020, 10:50 p.m.