API for StoXProject/RstoxFDA
Fisheries Dependent Analysis with RstoX
| Global functions | |
|---|---|
| AddAreaPositionStoxLanding | Man page Source code |
| AddGearGroupStoxBiotic | Man page Source code |
| AddGearGroupStoxLanding | Man page Source code |
| AddPeriodStoxBiotic | Man page Source code |
| AddPeriodStoxLanding | Man page Source code |
| AddStratumStoxBiotic | Man page Source code |
| AddStratumStoxLanding | Man page Source code |
| AgeErrorMatrix | Man page |
| AreaPosition | Man page |
| CarNeighbours | Man page |
| ConvertLengthBiotic | Man page Source code |
| ConvertWeightBiotic | Man page Source code |
| DefineAgeErrorMatrix | Man page Source code |
| DefineAreaPosition | Man page Source code |
| DefineCarNeighbours | Man page Source code |
| DefineLengthConversionParameters | Man page Source code |
| DefinePeriod | Man page Source code |
| DefineStockSplittingParameters | Man page Source code |
| DefineWeightConversionFactor | Man page Source code |
| FDIR.factors.VIII.2022 | Man page |
| FilterAgeLengthOutliersStoxBiotic | Man page Source code |
| FilterWeightLengthOutliersStoxBiotic | Man page Source code |
| GSAsubArea | Man page |
| GearGroupFdirTable | Man page |
| ICESareas | Man page |
| ICESdivision | Man page |
| ICESrectangles | Man page |
| ICESsubArea | Man page |
| ICESsubDivision | Man page |
| ICESunit | Man page |
| KommunePolygons | Man page |
| LandingData | Man page |
| LandingsArchiveData | Man page |
| LengthConversionTable | Man page |
| ListBioticDifference | Man page Source code |
| LoadFdaStratumPolygon | Man page Source code |
| LocodeTable | Man page |
| LstLogbookData | Man page |
| MetierTable | Man page |
| NAFOareas | Man page |
| ParameterConvergenceData | Man page |
| ParameterizationSummaryData | Man page |
| ParameterizeRecaModels | Man page Source code |
| PlotCatchAtAgeCovariances | Source code |
| PlotCatchAtAgeTotals | Man page Source code |
| PlotCatchAtAgeTotalsData | Man page |
| PlotFisheriesOverviewSpatial | Man page Source code |
| PlotFisheriesOverviewSpatialData | Man page |
| PlotFisheriesOverviewTable | Source code |
| PlotFisheriesOverviewTemporal | Man page Source code |
| PlotFisheriesOverviewTemporalData | Man page |
| PlotMeanLengthAtAge | Man page Source code |
| PlotMeanLengthAtAgeData | Man page |
| PlotMeanVariableAtAge | Source code |
| PlotMeanWeightAtAge | Man page Source code |
| PlotMeanWeightAtAgeData | Man page |
| PlotPosteriorTraces | Man page Source code |
| PlotPosteriorTracesData | Man page |
| PlotSamplingCoverage | Man page Source code |
| PlotSamplingCoverageData | Man page |
| PlotSamplingOverviewCell | Man page Source code |
| PlotSamplingOverviewCellData | Man page |
| PlotSamplingVariables | Man page Source code |
| PlotSamplingVariablesData | Man page |
| PrepareRecaEstimate | Man page Source code |
| ReadLandingFDA | Man page Source code |
| RecaCatchAtAge | Man page |
| RecaCatchAtAgeExample | Man page |
| RecaData | Man page |
| RecaParameterData | Man page |
| RecaResult | Man page |
| ReportFdaCatchAtAgeCovarianceData | Man page |
| ReportFdaCatchAtAgeData | Man page |
| ReportFdaCatchAtLengthAndAgeData | Man page |
| ReportFdaCatchAtLengthData | Man page |
| ReportFdaData | Man page |
| ReportFdaLandingData | Man page |
| ReportFdaLandings | Man page Source code |
| ReportFdaLengthAtAgeData | Man page |
| ReportFdaSOP | Man page Source code |
| ReportFdaSampling | Man page Source code |
| ReportFdaSamplingData | Man page |
| ReportFdaSopData | Man page |
| ReportFdaSummaryData | Man page |
| ReportFdaWeightAtAgeData | Man page |
| ReportParameterConvergence | Man page Source code |
| ReportRecaCatchAtAge | Man page Source code |
| ReportRecaCatchAtAgeCovariance | Man page Source code |
| ReportRecaCatchAtLength | Man page Source code |
| ReportRecaCatchAtLengthAndAge | Man page Source code |
| ReportRecaCatchStatistics | Man page Source code |
| ReportRecaLengthAtAge | Man page Source code |
| ReportRecaParameterStatistics | Man page Source code |
| ReportRecaWeightAtAge | Man page Source code |
| RstoxFDA | Man page |
| RstoxFDA-package | Man page |
| RunRecaEstimate | Man page Source code |
| RunRecaModels | Man page Source code |
| SetAreaPositionsBiotic | Man page Source code |
| SetShortGearBiotic | Man page Source code |
| SetStartDateBiotic | Man page Source code |
| SetTimeBiotic | Man page Source code |
| StockSplittingParameters | Man page |
| StoxBioticDataExample | Man page |
| StoxLandingDataExample | Man page |
| TemporalDefinition | Man page |
| TripPartition | Man page |
| WeightConversionTable | Man page |
| activityCensus | Man page |
| addLogbookColumns | Man page Source code |
| addPartCount | Source code |
| addSamplingId | Source code |
| adjustWithLogbookRefImpl | Source code |
| appendAreaCode | Man page Source code |
| appendGear | Source code |
| appendMetier | Man page Source code |
| appendPosition | Man page Source code |
| appendTemporal | Source code |
| appendTripIdLandings | Man page Source code |
| appendTripIdLogbooks | Man page Source code |
| areaCodeConversionTable | Man page Source code |
| bioticDiff | Source code |
| calculateCarNeighbours | Source code |
| calculateLogbookPartitionByTrip | Man page Source code |
| catchsamples | Man page |
| categoriseDate | Man page Source code |
| checkAgeLength | Source code |
| checkAllSampled | Source code |
| checkAllSampledCar | Source code |
| checkCovariateConsistency | Source code |
| checkEcaObj | Source code |
| checkGear | Source code |
| checkGlobalParameters | Source code |
| checkLandings | Source code |
| checkMandatory | Source code |
| checkMetierTable | Source code |
| checkOptions | Source code |
| checkProbabilities | Source code |
| checkSamplesInFrame | Source code |
| checkSelectivityDevice | Source code |
| checkSymmetry | Source code |
| checkTarget | Source code |
| checkWeightLength | Source code |
| check_columns_present | Source code |
| check_cov_vs_info | Source code |
| check_covariates | Source code |
| check_data_matrix | Source code |
| check_intervalWidth | Source code |
| check_landing_duplicates | Source code |
| check_landings_cov | Source code |
| check_none_missing | Source code |
| convertAgeErrorMatrixReca | Source code |
| convertAgeErrorMatrixStox | Source code |
| convertCarNeighbours2reca | Source code |
| convertCarNeighbours2recaWrap | Source code |
| convertCarNeighbours2stox | Source code |
| convertCodes | Man page Source code |
| convertCovariateMap2PrepReca | Source code |
| convertCovariateMap2Stox | Source code |
| convertModelFit | Source code |
| convertModelFit2Stox | Source code |
| convertModelFit2eca | Source code |
| convertPrepReca2stox | Source code |
| convertRecaData | Man page Source code |
| convertStockSplittingParameters2reca | Source code |
| convertStockSplittingParameters2stox | Source code |
| convertStox2PrepReca | Source code |
| convertToErsData | Man page Source code |
| crossChainConvergence | Source code |
| deprecationWarning | Source code |
| desimals | Source code |
| ecaResult2Stox | Source code |
| filterLogLinear | Man page Source code |
| filterLogLinearMask | Source code |
| filterVonBsigma | Man page Source code |
| filterVonBsigmaMask | Source code |
| formatCatchIdMap | Source code |
| getBioticCatchSampleAdress | Source code |
| getCovariateMap | Man page Source code |
| getCovariateMatrix | Source code |
| getDataMatrixAgeLength | Source code |
| getDataMatrixWeightLength | Source code |
| getDefault | Source code |
| getInfoMatrix | Source code |
| getLandings | Man page Source code |
| getLandingsFromStoxLandings | Source code |
| getLssSpec | Source code |
| getNeighbours | Source code |
| getPlusGr | Source code |
| getPlusGroupMeans | Source code |
| imputeCatchesLandings | Man page Source code |
| is.AgeErrorMatrix | Man page Source code |
| is.AreaPosition | Man page Source code |
| is.CarNeighbours | Man page Source code |
| is.Date | Source code |
| is.LengthConversionTable | Man page Source code |
| is.MetierTable | Source code |
| is.POSIXct | Source code |
| is.ParameterConvergenceData | Man page Source code |
| is.ParameterizationSummaryData | Man page Source code |
| is.RecaCatchAtAge | Man page Source code |
| is.RecaData | Man page Source code |
| is.RecaParameterData | Man page Source code |
| is.RecaPrediction | Source code |
| is.RecaResult | Man page Source code |
| is.ReportFdaData | Man page Source code |
| is.ReportFdaSOP | Man page Source code |
| is.ReportFdaSamplingData | Man page Source code |
| is.StockSplittingParameters | Man page Source code |
| is.StoxBioticData | Source code |
| is.TemporalDefinition | Man page Source code |
| is.Translation | Man page Source code |
| is.WeightConversionTable | Man page Source code |
| isGiven | Source code |
| kommuner2022 | Man page |
| landings | Man page |
| loadCarNeighboursFile | Source code |
| locationsFdir2017 | Man page |
| locationsFdir2018 | Man page |
| logbookAdjustment | Man page Source code |
| mainareaFdir2017 | Man page |
| mainareaFdir2018 | Man page |
| makeAgeTracesRECA | Man page Source code |
| makeResultTableRECA | Man page Source code |
| makeTempDirReca | Source code |
| makeTripIds | Man page Source code |
| mergePolygons | Man page Source code |
| metier4table | Man page |
| metier5table | Man page |
| metier6table | Man page |
| packCMlist | Source code |
| place | Source code |
| plotAgeTraces | Man page Source code |
| plotArea | Man page Source code |
| plotAreaComparison | Man page Source code |
| plotBubbleMap | Man page Source code |
| plotCatchAtAge | Man page Source code |
| portcodes2020 | Man page |
| prepRECA | Man page Source code |
| processPropertyFormats | Man page |
| rEcaDataReport | Man page Source code |
| readFdirLandingsArchive | Man page Source code |
| readLstFile | Man page Source code |
| readMetierTable | Man page Source code |
| readStockSplittingParameters | Source code |
| readTabSepFile | Source code |
| recaDataExample | Man page |
| recaFit2Stox | Source code |
| recaPrediction | Man page |
| removeTempDirReca | Source code |
| reportCovarianceAtAge | Source code |
| reportParameterAtAge | Source code |
| reportParameterAtAgeLength | Source code |
| reportParameterAtLength | Source code |
| runRECA | Man page Source code |
| sanitizeRecaInput | Man page Source code |
| setAgeGroup | Source code |
| setDecimals | Source code |
| setLengthGroup | Source code |
| setPlotSaveAttributes | Source code |
| setUnits | Source code |
| sourceLogbookColumns | Man page Source code |
| stox2recaFit | Source code |
| stoxFunctionAttributes | Man page |
| stoxWarning | Source code |
| summaryLgaCCPar | Source code |
| summaryLgaPar | Source code |
| summaryPaaPar | Source code |
| summaryWglCCPar | Source code |
| summaryWglPar | Source code |
| tabulateFisheries | Man page Source code |
| transformSpatialPolygons | Source code |
| unpackCMlist | Source code |
| warnMissingCovariateStoxBiotic | Source code |
| warnMissingLandings | Source code |
| writeSpDataFrameAsWKT | Man page Source code |
