StoXProject/RstoxFDA
Fisheries Dependent Analysis with RstoX

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StoXProject/RstoxFDA: Fisheries Dependent Analysis with RstoX
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API

API for StoXProject/RstoxFDA
Fisheries Dependent Analysis with RstoX

Global functions
AddAreaPositionStoxLanding Man page Source code
AddGearGroupStoxBiotic Man page Source code
AddGearGroupStoxLanding Man page Source code
AddPeriodStoxBiotic Man page Source code
AddPeriodStoxLanding Man page Source code
AddStratumStoxBiotic Man page Source code
AddStratumStoxLanding Man page Source code
AgeErrorMatrix Man page
AnalyticalPSUEstimate Source code
AnalyticalPSUEstimateData Man page
AnalyticalPopulationEstimate Source code
AnalyticalPopulationEstimateData Man page
AnalyticalRatioEstimate Source code
AreaPosition Man page
AssignPSUSamplingParameters Source code
CarNeighbours Man page
CatchLotteryExample Man page
CatchLotteryLandingExample Man page
CatchLotterySamplingExample Man page
CollapseStrata Source code
ConvertLengthBiotic Man page Source code
ConvertWeightBiotic Man page Source code
DefineAgeErrorMatrix Man page Source code
DefineAreaPosition Man page Source code
DefineCarNeighbours Man page Source code
DefineIndividualSamplingParameters Source code
DefineLengthConversionParameters Man page Source code
DefinePSUSamplingParameters Source code
DefinePeriod Man page Source code
DefineSamplingHierarchy Source code
DefineStockSplittingParameters Man page Source code
DefineWeightConversionFactor Man page Source code
FDIR.factors.VIII.2022 Man page
FilterAgeLengthOutliersStoxBiotic Man page Source code
FilterWeightLengthOutliersStoxBiotic Man page Source code
GSAsubArea Man page
GearGroupFdirTable Man page
ICESareas Man page
ICESdivision Man page
ICESrectangles Man page
ICESsubArea Man page
ICESsubDivision Man page
ICESunit Man page
IndividualSamplingParametersData Man page
KommunePolygons Man page
LandingData Man page
LandingsArchiveData Man page
LengthConversionTable Man page
LiftStrata Source code
ListBioticDifference Man page Source code
LoadFdaStratumPolygon Man page Source code
LocodeTable Man page
LstLogbookData Man page
MetierTable Man page
NAFOareas Man page
PSUSamplingParametersData Man page
ParameterConvergenceData Man page
ParameterizationSummaryData Man page
ParameterizeRecaModels Man page Source code
PlotCatchAtAgeCovariances Source code
PlotCatchAtAgeTotals Man page Source code
PlotCatchAtAgeTotalsData Man page
PlotFisheriesOverviewSpatial Man page Source code
PlotFisheriesOverviewSpatialData Man page
PlotFisheriesOverviewTable Source code
PlotFisheriesOverviewTemporal Man page Source code
PlotFisheriesOverviewTemporalData Man page
PlotMeanLengthAtAge Man page Source code
PlotMeanLengthAtAgeData Man page
PlotMeanVariableAtAge Source code
PlotMeanWeightAtAge Man page Source code
PlotMeanWeightAtAgeData Man page
PlotPosteriorTraces Man page Source code
PlotPosteriorTracesData Man page
PlotSamplingCoverage Man page Source code
PlotSamplingCoverageData Man page
PlotSamplingOverviewCell Man page Source code
PlotSamplingOverviewCellData Man page
PlotSamplingVariables Man page Source code
PlotSamplingVariablesData Man page
PrepareHorvitzThompsonDomainEstimate Source code
PrepareRecaEstimate Man page Source code
ProbabilisticSuperIndividuals Source code
ReadLandingFDA Man page Source code
RecaCatchAtAge Man page
RecaCatchAtAgeExample Man page
RecaData Man page
RecaParameterData Man page
RecaResult Man page
ReportAnalyticalCatchAtAge Source code
ReportFdaCatchAtAgeCovarianceData Man page
ReportFdaCatchAtAgeData Man page
ReportFdaCatchAtLengthAndAgeData Man page
ReportFdaCatchAtLengthData Man page
ReportFdaData Man page
ReportFdaLandingData Man page
ReportFdaLandings Man page Source code
ReportFdaLengthAtAgeData Man page
ReportFdaSOP Man page Source code
ReportFdaSampling Man page Source code
ReportFdaSamplingData Man page
ReportFdaSopData Man page
ReportFdaSummaryData Man page
ReportFdaWeightAtAgeData Man page
ReportParameterConvergence Man page Source code
ReportRecaCatchAtAge Man page Source code
ReportRecaCatchAtAgeCovariance Man page Source code
ReportRecaCatchAtLength Man page Source code
ReportRecaCatchAtLengthAndAge Man page Source code
ReportRecaCatchStatistics Man page Source code
ReportRecaLengthAtAge Man page Source code
ReportRecaParameterStatistics Man page Source code
ReportRecaWeightAtAge Man page Source code
RstoxFDA Man page
RunRecaEstimate Man page Source code
RunRecaModels Man page Source code
SetAreaPositionsBiotic Man page Source code
SetShortGearBiotic Man page Source code
SetStartDateBiotic Man page Source code
SetTimeBiotic Man page Source code
StockSplittingParameters Man page
StoxBioticDataExample Man page
StoxLandingDataExample Man page
TemporalDefinition Man page
TripPartition Man page
WeightConversionTable Man page
activityCensus Man page
addLogbookColumns Man page Source code
addPartCount Source code
addSamplingId Source code
adjustWithLogbookRefImpl Source code
appendAreaCode Man page Source code
appendGear Source code
appendMetier Man page Source code
appendPosition Man page Source code
appendTemporal Source code
appendTripIdLandings Man page Source code
appendTripIdLogbooks Man page Source code
areaCodeConversionTable Man page Source code
assumeDesignParametersStoxBiotic Source code
bioticDiff Source code
calculateCarNeighbours Source code
calculateLogbookPartitionByTrip Man page Source code
catchsamples Man page
categoriseDate Man page Source code
checkAgeLength Source code
checkAllSampled Source code
checkAllSampledCar Source code
checkCovariateConsistency Source code
checkEcaObj Source code
checkGear Source code
checkGlobalParameters Source code
checkLandings Source code
checkMandatory Source code
checkMetierTable Source code
checkOptions Source code
checkProbabilities Source code
checkSamplesInFrame Source code
checkSelectivityDevice Source code
checkSymmetry Source code
checkTarget Source code
checkWeightLength Source code
check_columns_present Source code
check_cov_vs_info Source code
check_covariates Source code
check_data_matrix Source code
check_intervalWidth Source code
check_landing_duplicates Source code
check_landings_cov Source code
check_none_missing Source code
collapseStrataIndividualDesignParamaters Source code
convertAgeErrorMatrixReca Source code
convertAgeErrorMatrixStox Source code
convertCarNeighbours2reca Source code
convertCarNeighbours2recaWrap Source code
convertCarNeighbours2stox Source code
convertCodes Man page Source code
convertCovariateMap2PrepReca Source code
convertCovariateMap2Stox Source code
convertModelFit Source code
convertModelFit2Stox Source code
convertModelFit2eca Source code
convertPrepReca2stox Source code
convertRecaData Man page Source code
convertStockSplittingParameters2reca Source code
convertStockSplittingParameters2stox Source code
convertStox2PrepReca Source code
convertToErsData Man page Source code
covarAbundance Source code
covarVariables Source code
crossChainConvergence Source code
deprecationWarning Source code
desimals Source code
eca.estimate Source code
ecaResult2Stox Source code
extractIndividualDesignParametersStoxBiotic Source code
filterLogLinear Man page Source code
filterLogLinearMask Source code
filterVonBsigma Man page Source code
filterVonBsigmaMask Source code
formatCatchIdMap Source code
getBioticCatchSampleAdress Source code
getCovariateMap Man page Source code
getCovariateMatrix Source code
getDataMatrixAgeLength Source code
getDataMatrixWeightLength Source code
getDefault Source code
getInfoMatrix Source code
getLandings Man page Source code
getLandingsFromStoxLandings Source code
getLssSpec Source code
getNeighbours Source code
getPlusGr Source code
getPlusGroupMeans Source code
imputeCatchesLandings Man page Source code
is.AgeErrorMatrix Man page Source code
is.AnalyticalPopulationEstimateData Source code
is.AreaPosition Man page Source code
is.CarNeighbours Man page Source code
is.Date Source code
is.IndividualSamplingParametersData Source code
is.LengthConversionTable Man page Source code
is.MetierTable Source code
is.POSIXct Source code
is.PSUSamplingParametersData Source code
is.ParameterConvergenceData Man page Source code
is.ParameterizationSummaryData Man page Source code
is.RecaCatchAtAge Man page Source code
is.RecaData Man page Source code
is.RecaParameterData Man page Source code
is.RecaPrediction Source code
is.RecaResult Man page Source code
is.ReportFdaData Man page Source code
is.ReportFdaSOP Man page Source code
is.ReportFdaSamplingData Man page Source code
is.StockSplittingParameters Man page Source code
is.StoxBioticData Source code
is.TemporalDefinition Man page Source code
is.Translation Man page Source code
is.WeightConversionTable Man page Source code
isGiven Source code
kommuner2022 Man page
landings Man page
loadCarNeighboursFile Source code
locationsFdir2017 Man page
locationsFdir2018 Man page
logbookAdjustment Man page Source code
mainareaFdir2017 Man page
mainareaFdir2018 Man page
makeAgeTracesRECA Man page Source code
makePlusGroupAnalytical Source code
makeResultTableRECA Man page Source code
makeTempDirReca Source code
makeTripIds Man page Source code
mergePolygons Man page Source code
metier4table Man page
metier5table Man page
metier6table Man page
packCMlist Source code
parseDesignParameters Source code
place Source code
plotAgeTraces Man page Source code
plotArea Man page Source code
plotAreaComparison Man page Source code
plotBubbleMap Man page Source code
plotCatchAtAge Man page Source code
portcodes2020 Man page
prepRECA Man page Source code
processPropertyFormats Man page
rEcaDataReport Man page Source code
readFdirLandingsArchive Man page Source code
readLstFile Man page Source code
readMetierTable Man page Source code
readStockSplittingParameters Source code
readTabSepFile Source code
recaDataExample Man page
recaFit2Stox Source code
recaPrediction Man page
removeTempDirReca Source code
reportCovarianceAtAge Source code
reportParameterAtAge Source code
reportParameterAtAgeLength Source code
reportParameterAtLength Source code
runRECA Man page Source code
sanitizeRecaInput Man page Source code
setAgeGroup Source code
setDecimals Source code
setLengthGroup Source code
setPlotSaveAttributes Source code
setUnits Source code
sourceLogbookColumns Man page Source code
stox2recaFit Source code
stoxFunctionAttributes Man page
stoxWarning Source code
summaryLgaCCPar Source code
summaryLgaPar Source code
summaryPaaPar Source code
summaryWglCCPar Source code
summaryWglPar Source code
tabulateFisheries Man page Source code
transformSpatialPolygons Source code
truncateStringVector Source code
unpackCMlist Source code
warnMissingCovariateStoxBiotic Source code
warnMissingLandings Source code
writeSpDataFrameAsWKT Man page Source code
StoXProject/RstoxFDA documentation built on Nov. 12, 2024, 3:42 a.m.

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