StoXProject/RstoxFramework
The Engine of StoX

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StoXProject/RstoxFramework: The Engine of StoX
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API

API for StoXProject/RstoxFramework
The Engine of StoX

Global functions
.onLoad Source code
AcousticPSU Man page
BioticAssignment Man page
BioticPSU Man page
Bootstrap Man page Source code
BootstrapData Man page
DataTypes Man page
JSON2processData Source code
KnownDifferencesOldVersusNewStoX Man page
ModelData Man page
PlotReportBootstrap Man page Source code
PlotReportBootstrapData Man page
PlotReportBootstrapOne Source code
ProcessData Man page
ProjectUtils Man page
Projects Man page
ReportBootstrap Man page Source code
ReportBootstrapData Man page
ResampleBioticAssignmentByAcousticPSU Man page Source code
ResampleBioticAssignmentByStratum Man page Source code
ResampleMeanLengthDistributionData Man page Source code
ResampleMeanNASCData Man page Source code
ResampleMeanSpeciesCategoryCatchData Man page Source code
ResamplePreySpeciesCategoryCatchDataHierarchical Man page Source code
ResamplePreySpeciesCategoryCatchDataHierarchicalNotUsingmakeUniq Man page Source code
ResamplePreySpeciesCategoryCatchDataHierarchicalUsingScaling Man page Source code
RstoxFramework Man page
RstoxFramework-package Man page
RstoxPackageStatus Man page Source code
StoXGUI_interfaces Man page
Stratum Man page
addAcousticPSU Man page Source code
addBioticPSU Man page Source code
addEDSU Man page Source code
addEmptyProcess Source code
addFunctionNameToReplaceData Source code
addHaulToAssignment Man page Source code
addMissingAttributes Source code
addPSU Source code
addPSUToPSUProcessData Source code
addProcess Man page Source code
addProcesses Source code
addProjectDescriptionAttributes Source code
addSSU Source code
addSSUToPSUProcessData Source code
addStation Man page Source code
addStoredProjectDescriptionAttributes Source code
addStratum Man page Source code
addTimeToFileName Source code
addToDateTime Source code
addToProcessIndexTable Source code
all_equal_mergeIfDifferentNumberOfRows Source code
all_equal_reorder Source code
appendProjectDescription Source code
applyAddAttribute Source code
applyAddParameter Source code
applyBackwardCompatibility Source code
applyBackwardCompatibilityAction Source code
applyBackwardCompatibilityActionsReordered Source code
applyEmptyFunction Source code
applyProjectXML2.7 Source code
applyRemoveParameter Source code
applyRenameAttribute Source code
applyRenameColumInProcessDataTable Source code
applyRenameFunction Source code
applyRenameParameter Source code
applyRenameProcessData Source code
applyResamplingFactor Source code
applyReshapeParameter Source code
applyReshapeProcessData Source code
applyTranslateParameter Source code
archiveProject Source code
areAllValidOutputDataClasses Source code
as.list1 Source code
assignment_addHaul Source code
assignment_removeHaul Source code
bootstrapRDataToNetCDF4 Man page Source code
buildSpatialFileReferenceString Source code
capitalizeFirstLetter Source code
cellToJSONString Source code
cellToJSONStringOne Source code
cellToJSONStringOneColumn Source code
checkActionKeys Source code
checkBackwardCompatibilityVersion Source code
checkDataType Source code
checkFunctionInput Source code
checkFunctionInputs Source code
checkProcessName Source code
classRecursive Source code
closeProject Man page Source code
compareByCbinding Source code
compareByMerging Source code
compareDataTablesUsingClassOf Source code
compareProjectToStoredOutputFiles Man page Source code
compareProjectToStoredOutputFilesAll Man page Source code
compareReport Source code
compareSweptAreaBaseline Man page Source code
convertFunctionParameter Source code
convertKeys2.7To3 Man page Source code
convertProcessDataToGeojson Source code
convertSampleUnitToChatacter Source code
convertStoX2.7To3 Man page Source code
convertToRelativePaths Source code
copyInputDataFrom2.7 Source code
copyInputFilesOneType Source code
copyProject Man page Source code
createEmptyProcess Source code
createNestedListElement Source code
createNewProcessID Source code
createProcessIDString Source code
createProject Man page Source code
createProjectSessionFolderStructure Source code
createProjectSkeleton Source code
createReplaceData Source code
createReplaceDataSansFunctionName Source code
createStoXNetCDF4FileDataType Source code
create_segment Source code
dataTable2sf_LINESTRING Source code
dataTable2sf_POINT Source code
defineProcessIDs Source code
deleteProcessData Source code
deleteProcessOutput Source code
deleteProject Man page Source code
deleteProjectMemoryFile Source code
detectFilePaths Source code
detectOptions Source code
drawNamedSeedList Source code
drawSeedTable Source code
duplicateProcess Man page Source code
emptyFunctionInputs Source code
emptyFunctionParameters Source code
emptyNamedList Source code
emptyNonVisibleArguments Source code
emptyProcessName Source code
escapeForRegex Source code
escapeNewLine Source code
escapeTab Source code
escapeTabAndNewline Source code
estimateTimeOfProcesses Man page Source code
expandDT Man page Source code
expandLogical Source code
expandProcess Man page Source code
expression2list Man page Source code
extractArgumentsToShow Source code
extractErrorIDs Man page Source code
extractErrorIDsOne Source code
extractFromAllProcessOutputs Source code
extractPackageNameAsNames Man page Source code
extractPage Source code
extractStoxFunctionParameterPossibleValues Source code
extrapolateEDSU Source code
extrapolateLongitudeLatitude Source code
findProcess Man page Source code
fixedWidthTable Man page Source code
flattenDataTable Source code
flattenProcessOutput Source code
formatDiffs Source code
formatFunctionInputs Source code
formatFunctionName Source code
formatFunctionParameters Source code
formatPOSIXAsISO8601 Source code
formatProcess Source code
formatProcessName Source code
formatProcessParameters Source code
freadKeepQuotedCharacterAsCharacter Source code
general_arguments Man page
getAbsolutePath Source code
getAbsolutePaths Source code
getAcousticLayerData Source code
getAcousticPSUData Source code
getActiveProcess Man page Source code
getArgumentFilePaths Source code
getArgumentFilesDir Source code
getArgumentsToShow Source code
getAvaiableTemplates Man page Source code
getAvailableStoxFunctionNames Man page Source code
getBackwardCompatibility Source code
getBioticAssignmentData Source code
getBioticLayerData Source code
getBioticPSUData Source code
getBootstrapOneTable Source code
getBootstrapOutputVariables Man page Source code
getCanShowInMap Source code
getClickPoints Source code
getColumnsEndingWith Source code
getDataType Source code
getDataTypeFromBootstrap Source code
getDefaultOutputFileType Source code
getDependentPackageVersion Source code
getDimsAndNcharsFromOldBootstrapData Source code
getEDSUColours Man page Source code
getEDSUData Source code
getElementsByName Source code
getFilesRecursiveWithOrder Source code
getFilterOptionsOneTable Man page Source code
getFilterTableNames Man page Source code
getFolderDepth Source code
getFormatClass Source code
getFunctionArguments Source code
getFunctionHelpAsHtml Man page Source code
getFunctionInputData Source code
getFunctionInputs Source code
getFunctionName Source code
getFunctionNameFromPackageFunctionName Source code
getFunctionOutputDataType Source code
getFunctionParameterFormats Source code
getFunctionParameters Source code
getGroupingVariables_PlotReportBootstrap Source code
getIndicesAtFunctionName Source code
getInteractiveData Man page Source code
getInteractiveMode Man page Source code
getListOfXYByMerging Source code
getMapData Man page Source code
getMaxNchar Source code
getMaxProcessIntegerID Source code
getModel Source code
getModelData Man page Source code
getModelInfo Man page Source code
getNewArgumentFileSansExt Source code
getNewDefaultName Source code
getNewDefaultProcessName Source code
getNewProjectMemoryFileSansExt Source code
getNonEmptyModels Source code
getNonStandardAttributes Source code
getNumberOfBootstraps Source code
getObjectHelpAsHtml Man page Source code
getOfficialRstoxPackageVersion Man page Source code
getOptionList Source code
getOutputClass Source code
getOutputDepth Source code
getOutputDepthOne Source code
getOutputElementType Source code
getOutputVariablesUsedInReport Man page Source code
getPackageFunctionName Source code
getPackageNameAndVersionString Source code
getPackageNameFromFunctionName Source code
getPackageNameFromPackageFunctionName Source code
getPackageVersion Source code
getParameterElementPossibleValues Source code
getParameterFormatElement Source code
getParameterSingleInfo Man page Source code
getParameterTableInfo Man page Source code
getParameterTablePossibleValues Source code
getParameterVariableTypes Source code
getParameterVectorInfo Man page Source code
getPathToSingleFunctionPDF Source code
getPlottingVariable_PlotReportBootstrap Source code
getPointerFile Source code
getPointerFilesTable Source code
getPossibleProcessParameterNames Source code
getPossibleValuesOneTable Source code
getPossibleVariables Source code
getPossibleVariables.nc Source code
getPrec Source code
getPrecOne Source code
getPrecisionDigits Source code
getProcess Man page Source code
getProcessAndFunctionNames Man page Source code
getProcessArguments Source code
getProcessData Source code
getProcessGeoJsonOutput Man page Source code
getProcessIDByOffset Man page Source code
getProcessIDFromFunctionName Man page Source code
getProcessIDFromProcessName Man page Source code
getProcessIDsFromBeforeAfter Source code
getProcessIndexFromProcessID Man page Source code
getProcessName Source code
getProcessNameAndTableName Source code
getProcessNameFromProcessID Man page Source code
getProcessNameTableNameVariableName Source code
getProcessNamesAndTableNames Source code
getProcessNamesByDataType Source code
getProcessOutput Man page Source code
getProcessOutputElements Man page Source code
getProcessOutputFiles Man page Source code
getProcessOutputFolder Man page Source code
getProcessOutputTableNames Man page Source code
getProcessOutputTextFilePath Source code
getProcessParameters Source code
getProcessPlotOutput Man page Source code
getProcessPropertyFormats Source code
getProcessPropertySheet Man page Source code
getProcessTable Man page Source code
getProcessTableOutput Man page Source code
getProcessesSansProcessData Man page Source code
getProject Man page Source code
getProjectMemoryData Source code
getProjectPaths Man page Source code
getRelativePath Source code
getRelativePaths Source code
getRelevantClass Man page Source code
getRemainingGroupingVariables_PlotReportBootstrap Source code
getResamplableProcesses Man page Source code
getResampleFunctions Man page Source code
getResampledCount Source code
getRstoxFrameworkDefinitions Man page Source code
getSelection Source code
getSingleInputProcessID Source code
getStartMiddleEndPosition Source code
getStationColours Man page Source code
getStationData Source code
getStoxFunctionAttributes Source code
getStoxFunctionMetaData Source code
getStoxFunctionParameterDefaults Source code
getStoxFunctionParameterFormals Source code
getStoxFunctionParameterPossibleValues Source code
getStoxFunctionParameterPrimitiveTypes Source code
getStoxFunctionParameterTypes Source code
getStoxLibrary Source code
getStoxUnitOne Source code
getStoxUnits Source code
getStratumData Source code
getStratumList Source code
getSubPlotNames_PlotReportBootstrap Man page Source code
getTableNames Man page Source code
getTemplate Man page Source code
getTrailingInteger Source code
getValidFunctionsOneResamplableDataType Source code
getVarFromNC Source code
getVarList Source code
getVariableNameElementsList Source code
getVersionStringOfPackage Source code
getreplaceArgsList Source code
ggsaveApplyDefaults Source code
hasFileOutput Man page Source code
hasOnlyOneTabble Source code
hasUseOutputData Source code
initialAggregateBootstrapDataOne Source code
initiateActiveProcessID Man page Source code
initiateRstoxFramework Man page Source code
insertToArgumentFileTable Source code
interpretTableNameFromVariables Source code
interpretVersionString Source code
is.convertableToVector Source code
is.listOfOneList Source code
isActiveProcess Source code
isBootstrapFunction Source code
isDataTableRugged Source code
isFunctionInput Source code
isOfficialRstoxFrameworkVersion Source code
isOpenProject Man page Source code
isProcess Source code
isProcessDataFunction Source code
isProcessOutputDataType Source code
isProject Man page Source code
isProjectOne Source code
isRunning Man page Source code
isSaved Man page Source code
isSingleParameter Source code
isValidOutputDataClass Source code
isVectorParameter Source code
json2expression Man page Source code
list2expression Man page Source code
listArgumentFiles Source code
listArgumentFilesWithBasenamesAsNames Source code
listMemoryFiles Source code
listOutputfiles Source code
loadRData Source code
locateUniqueKeys Source code
matchParameter Source code
matchProcesses Source code
merge2 Source code
mergeAssignment2.7With3 Source code
modifyAssignment Source code
modifyFunctionInputs Source code
modifyFunctionName Source code
modifyFunctionParameters Source code
modifyModel Man page Source code
modifyPSUProcessData Source code
modifyProcess Man page Source code
modifyProcessData Source code
modifyProcessName Source code
modifyProcessNameInFunctionInputs Source code
modifyProcessNameInProcessIndexTable Source code
modifyProcessParameters Source code
modifyProject Man page Source code
modifyProjects Man page Source code
modifyStratum Man page Source code
new2OldStation Source code
old2NewBeamKey Source code
old2NewESDU Source code
old2NewLogKey Source code
onlyOneToResample_Warning Source code
onlyValidCharactersInProcessnName Source code
openIfNotAlreadyOpenProject Source code
openProject Man page Source code
openProjectAsTemplate Man page Source code
orderBackwardCompatibility Source code
orderBackwardCompatibilityOne Source code
orderEachProcess Source code
orderProjectDescription Source code
parseParameter Man page Source code
possibleValuesToJSONStringOne Source code
prepareBootstrap Source code
prependProcess Man page Source code
processNameExists Source code
processPropertyFormats Man page
progressOfProcesses Man page Source code
purgeOutput Man page Source code
rbindListRecursive Source code
rbindSublistByName Source code
rbindlistByName Source code
readBootstrapData Man page Source code
readBootstrapDataOne Source code
readCharAll Source code
readMemoryFile Man page Source code
readModelData Man page Source code
readOfficialRstoxPackageVersionsFile Man page Source code
readOutputClass Source code
readOutputRDataFile Source code
readPointerFile Source code
readProcessDataSchema Source code
readProcessIndexTable Source code
readProcessOutputFile Man page Source code
readProjectDescription Man page Source code
readProjectDescriptionJSON Source code
readProjectMemoryIndex Source code
readStoX2.7OutputFile Man page Source code
readStoredProjectDescriptionAttributes Source code
readStoxOutputFile Source code
readStoxOutputFiles Source code
readStringVectorAttribute Source code
readsItsOwnOutputDataType Source code
rearrangeProcessIndexTable Source code
rearrangeProcesses Man page Source code
reduceProcessDataOneProcess Source code
removeAcousticPSU Man page Source code
removeAllAcousticPSUsOfStratum Source code
removeAllBioticPSUsOfStratum Source code
removeAllPSUsOfStratum Source code
removeAllPSUsOfStratumFromPSUProcessData Source code
removeBioticPSU Man page Source code
removeEDSU Man page Source code
removeFromArgumentFileTable Source code
removeFromProcessIndexTable Source code
removeHaulFromAssignment Man page Source code
removeIDsFromGeojson Source code
removePSU Source code
removePSUFromPSUProcessData Source code
removeParameterInOneProcess Source code
removeProcess Man page Source code
removeProcessMemory Source code
removeProcesses Man page Source code
removeSSU Source code
removeSSUFromPSUProcessData Source code
removeStation Man page Source code
removeStratum Man page Source code
renameAcousticPSU Source code
renameBioticPSU Source code
renameByName Source code
renameDataFolders Source code
renamePSU Source code
renamePSUInPSUProcessData Source code
renameParameterInOneProcess Source code
renameProcessDataInOneProcess Source code
renameProcessDataTableColumnInOneProcess Source code
renameStratum Man page Source code
replaceEmpty Source code
replaceEmptyInDataTable Source code
replaceSpatialFileReference Source code
reportFunctionOutputOne Source code
resampleData Source code
resampleDataBy_new4.0.0_excludingPSUsThatAreNotResampled Source code
resampleDataOne Source code
resampleData_UsingScaling Source code
resampleOneGroup Source code
resampleOne_UsingScaling Source code
resetModel Man page Source code
reshapeParameter Source code
reshapeProcessData Source code
resolveProjectPath Source code
roundSignif Source code
roundSignifDT Source code
runFunction Man page Source code
runFunction.JSON Man page Source code
runModel Man page Source code
runOneBootstrap Source code
runProcess Man page Source code
runProcesses Man page Source code
runProject Man page Source code
runProject_ReplaceAcousticFiles Man page Source code
runProjects Man page Source code
saveArgumentFile Source code
saveAsProject Man page Source code
savePointerFile Source code
savePointerFilesTableAsPointerFiles Source code
saveProject Man page Source code
scanForModelError Man page Source code
selectRobust Source code
selectValidElements Source code
setCharacterColumnsToNA Source code
setDTs Source code
setFunctionName Source code
setListElements Source code
setLogicalColumnsToNA Source code
setNonStandardAttributes Source code
setNotRunning Man page Source code
setOrders Source code
setProcessMemory Source code
setProcessPropertyValue Man page Source code
setRstoxPrecision Source code
setRunning Man page Source code
setSavedStatus Source code
setUseProcessData Source code
simplifyListReadFromJSON Source code
skipRowsAtNA Source code
sortUnique Source code
splitMergedTable Source code
splitProjectMemoryList Source code
splitSelectionOneTable Source code
splitStrByOpAtLevel0 Source code
stopProcesses Man page Source code
stoxFunctionAttributes Man page
stripLeadingAndTrailingQuote Source code
subsetByAllEqual Man page Source code
subsetModelData Source code
subsetNMDBiotic Source code
subsetNMDEchosounder Source code
subsetXMLFile Source code
testWhetherFunctionIsInPackage Source code
toJSONString Source code
translateParameterInOneProcess Source code
truncateString Source code
unReDoProject Man page Source code
unescapeSpaceChars Source code
uniqueText Source code
unlistOneStep Source code
unlistProcessOutput Source code
unlistSep Source code
unlistToDataType Man page Source code
unwrapProjectMemoryFile Source code
unzipProject Man page Source code
updateInputDataFiles Source code
updateInputDataFilesOne Source code
validateFunction Source code
validateProjectDescriptionFile Source code
validateStoxLibraryPackage Source code
vector2json Source code
vectorToJSONStringOne Source code
verifyPaths Source code
writeActiveProcessID Man page Source code
writeActiveProcessIDFromTable Source code
writeBootstrapOutputFromIndividualProjects Source code
writeBootstrapOutputFromOldBootstrapData Source code
writeMaxProcessIntegerID Source code
writeMemoryFile Source code
writeMemoryFiles Source code
writeProcessIndexTable Source code
writeProcessOutputElementsRDS Source code
writeProcessOutputMemoryFiles Source code
writeProcessOutputRDS1 Source code
writeProcessOutputRDS2 Source code
writeProcessOutputTextFile Source code
writeProjectDescription Man page Source code
writeProjectDescriptionAttributes Source code
writeProjectDescriptionJSON Man page Source code
writeProjectMemoryIndex Source code
writeStoxJsonSchema Man page Source code
writeStringVectorAsAttribute Source code
write_list_as_tables_NetCDFF4 Man page Source code
StoXProject/RstoxFramework documentation built on March 29, 2025, 12:11 p.m.

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