example_scrnaseq: Example of scRNA-seq data

In SydneyBioX/scFeatures: scFeatures: Multi-view representations of single-cell and spatial data for disease outcome prediction

Example of scRNA-seq data

Description

This is a subsampled version of the melanoma patients dataset as used in our manuscript. The original dataset is available at: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE120575.

Usage

data("example_scrnaseq")

Format

example_scrnaseq

A Seurat object with 3523 genes and 550 cells. Some of the key metadata columns are:

celltype

cell type of the cell

sample

patient ID of the cell

condition

whether the patient is a responder or non-responder

Source

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE120575

SydneyBioX/scFeatures documentation built on March 13, 2024, 12:36 a.m.