API for SydneyBioX/scFeatures
scFeatures: Multi-view representations of single-cell and spatial data for disease outcome prediction
| Global functions | |
|---|---|
| L_stats | Source code |
| bulk_sample | Source code |
| bulk_sample_celltype | Source code |
| check_data | Source code |
| example_scrnaseq | Man page |
| find_var_gene | Source code |
| formatData | Source code |
| format_pathway | Source code |
| generateBPParam | Source code |
| get_geneset | Source code |
| get_num_cell_per_celltype | Source code |
| get_num_cell_per_spot | Man page Source code |
| helper_CCI | Source code |
| helper_L_stat_sp | Source code |
| helper_L_stat_st | Source code |
| helper_celltype_interaction_sp | Source code |
| helper_celltype_interaction_st | Source code |
| helper_gene_cor | Source code |
| helper_gene_cor_celltype | Source code |
| helper_gene_mean | Source code |
| helper_gene_mean_celltype | Source code |
| helper_gene_mean_celltype_st | Source code |
| helper_gene_prop | Source code |
| helper_gene_prop_celltype | Source code |
| helper_moran | Source code |
| helper_nncorr_protein | Source code |
| helper_pathway_gsva | Source code |
| helper_pathway_mean | Source code |
| helper_pathway_mean_st | Source code |
| helper_pathway_prop | Source code |
| helper_proportion_ratio | Source code |
| helper_proportion_ratio_st | Source code |
| helper_proportion_raw | Source code |
| helper_proportion_raw_st | Source code |
| individual_L_stat_sp | Source code |
| individual_L_stat_st | Source code |
| individual_celltype_interaction_sp | Source code |
| individual_celltype_interaction_st | Source code |
| individual_geneset_proportion_celltype | Source code |
| individual_moran_cor | Source code |
| individual_nncorr_protein | Source code |
| rearrange_string | Source code |
| remove_mito_ribo | Man page Source code |
| run_CCI | Man page Source code |
| run_L_function | Man page Source code |
| run_Morans_I | Man page Source code |
| run_association_study_report | Man page Source code |
| run_celltype_interaction | Man page Source code |
| run_gene_cor | Man page Source code |
| run_gene_cor_celltype | Man page Source code |
| run_gene_mean | Man page Source code |
| run_gene_mean_celltype | Man page Source code |
| run_gene_prop | Man page Source code |
| run_gene_prop_celltype | Man page Source code |
| run_nn_correlation | Man page Source code |
| run_pathway_gsva | Man page Source code |
| run_pathway_mean | Man page Source code |
| run_pathway_prop | Man page Source code |
| run_proportion_logit | Man page Source code |
| run_proportion_ratio | Man page Source code |
| run_proportion_raw | Man page Source code |
| scFeatures | Man page Source code |
| scfeatures_result | Man page |
