remove_mito_ribo: Remove mitochondrial and ribosomal genes, and other highly...
In SydneyBioX/scFeatures: scFeatures: Multi-view representations of single-cell and spatial data for disease outcome prediction
View source: R/helper_celltype_expression.R
remove_mito_ribo R Documentation
Remove mitochondrial and ribosomal genes, and other highly correlated genes
Description
This function removes mitochondria and ribosomal genes and genes
highly correlated with these genes, as mitochondria and ribosomal
genes are typically not interesting to look at.
Usage
remove_mito_ribo(alldata)
Arguments
alldata
A list object containing expression data
Value
The list object with the mitochrondrial and ribosomal genes and other highly
correlated genes removed
Examples
utils::data("example_scrnaseq" , package = "scFeatures")
data <- example_scrnaseq
data <- list(data = data@assays$RNA@data)
data <- remove_mito_ribo(data)
SydneyBioX/scFeatures documentation built on March 13, 2024, 12:36 a.m.
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View source: R/helper_celltype_expression.R
| remove_mito_ribo | R Documentation |
Remove mitochondrial and ribosomal genes, and other highly correlated genes
Description
This function removes mitochondria and ribosomal genes and genes highly correlated with these genes, as mitochondria and ribosomal genes are typically not interesting to look at.
Usage
remove_mito_ribo(alldata)
Arguments
alldata |
A list object containing expression data |
Value
The list object with the mitochrondrial and ribosomal genes and other highly correlated genes removed
Examples
utils::data("example_scrnaseq" , package = "scFeatures")
data <- example_scrnaseq
data <- list(data = data@assays$RNA@data)
data <- remove_mito_ribo(data)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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