Man pages for TGuillerme/dispRity
Measuring Disparity in R
| adonis.dispRity | adonis dispRity (from 'vegan::adonis') |
| apply.NA | Apply inapplicable characters to a matrix. |
| BeckLee | Beck and Lee 2014 datasets |
| BeckLee_disparity | BeckLee_disparity |
| bhatt.coeff | Bhattacharrya Coefficient |
| boot.matrix | Bootstraps and rarefies data. |
| char.diff | Character differences |
| check.morpho | Check a morphological matrix consistency levels. |
| chrono.subsets | Separating data in chronological subsets. |
| Claddis.ordination | Imports data from Claddis |
| clean.data | Cleaning phylogenetic data |
| combine.subsets | Combines or cleans subsets. |
| crown.stem | Separates stem and crown species |
| custom.subsets | Separating data into custom subsets. |
| disparity | disparity |
| dispRity | Calculates disparity from a matrix. |
| dispRity.metric | Disparity metrics |
| dispRity-package | Measuring Disparity in R |
| dispRity.per.group | Disparity in different groups. |
| dispRity.through.time | Disparity through time. |
| dtt.dispRity | dtt dispRity (from 'geiger::dtt') |
| extinction.subsets | Getting the time subsets from at and after an extinction... |
| extract.dispRity | Extracting disparity values. |
| fill.dispRity | Fills a 'dispRity' object. |
| geomorph.ordination | Imports data from geomorph |
| get.bin.ages | Get time bins ages |
| get.contrast.matrix | Generates a contrast matrix. |
| get.subsets | Extracts subsets from a dispRity object. |
| make.dispRity | Creates a 'dispRity' object. |
| make.metric | Creating disparity metrics |
| matrix.dispRity | Fetching a matrix from a 'dispRity' object. |
| model.test | Model Test |
| model.test.sim | Simulate Model Test |
| model.test.wrapper | Model test wrapper |
| nodes.coordinates | Nodes coordinates |
| null.test | Testing a null hypothesis on multidimensional data. |
| pair.plot | Plots pairwise comparisons |
| plot.char.diff | Plots character differences |
| plot.dispRity | dispRity object plotting |
| print.dispRity | Prints a 'dispRity' object. |
| random.circle | Random circle |
| rescale.dispRity | Rescaling and centering disparity results. |
| sim.morpho | Simulates morphological data. |
| size.subsets | Size subsets. |
| slice.tree | Time slicing a tree. |
| sort.dispRity | Sorting or ordering a 'dispRity' object. |
| space.maker | Creating multidimensional spaces |
| summary.dispRity | dispRity object summary |
| test.dispRity | Testing disparity hypotheses |
| tree.age | Calculating the age of nodes and tips in a tree. |
