Measuring Disparity in R

adonis.dispRity | adonis dispRity (from 'vegan::adonis') |

apply.NA | Apply inapplicable characters to a matrix. |

BeckLee | Beck and Lee 2014 datasets |

BeckLee_disparity | BeckLee_disparity |

bhatt.coeff | Bhattacharrya Coefficient |

boot.matrix | Bootstraps and rarefies data. |

char.diff | Character differences |

check.morpho | Check a morphological matrix consistency levels. |

chrono.subsets | Separating data in chronological subsets. |

Claddis.ordination | Imports data from Claddis |

clean.data | Cleaning phylogenetic data |

combine.subsets | Combines or cleans subsets. |

crown.stem | Separates stem and crown species |

custom.subsets | Separating data into custom subsets. |

disparity | disparity |

dispRity | Calculates disparity from a matrix. |

dispRity.metric | Disparity metrics |

dispRity-package | Measuring Disparity in R |

dispRity.per.group | Disparity in different groups. |

dispRity.through.time | Disparity through time. |

dtt.dispRity | dtt dispRity (from 'geiger::dtt') |

extinction.subsets | Getting the time subsets from at and after an extinction... |

extract.dispRity | Extracting disparity values. |

fill.dispRity | Fills a 'dispRity' object. |

geomorph.ordination | Imports data from geomorph |

get.bin.ages | Get time bins ages |

get.contrast.matrix | Generates a contrast matrix. |

get.subsets | Extracts subsets from a dispRity object. |

make.dispRity | Creates a 'dispRity' object. |

make.metric | Creating disparity metrics |

matrix.dispRity | Fetching a matrix from a 'dispRity' object. |

model.test | Model Test |

model.test.sim | Simulate Model Test |

model.test.wrapper | Model test wrapper |

nodes.coordinates | Nodes coordinates |

null.test | Testing a null hypothesis on multidimensional data. |

pair.plot | Plots pairwise comparisons |

plot.char.diff | Plots character differences |

plot.dispRity | dispRity object plotting |

print.dispRity | Prints a 'dispRity' object. |

random.circle | Random circle |

rescale.dispRity | Rescaling and centering disparity results. |

sim.morpho | Simulates morphological data. |

size.subsets | Size subsets. |

slice.tree | Time slicing a tree. |

sort.dispRity | Sorting or ordering a 'dispRity' object. |

space.maker | Creating multidimensional spaces |

summary.dispRity | dispRity object summary |

test.dispRity | Testing disparity hypotheses |

tree.age | Calculating the age of nodes and tips in a tree. |

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