API for THJlab/seqNdisplayR
A Tool for Customizable and Reproducible Plotting of Sequencing Coverage Data
| Global functions | |
|---|---|
| .onLoad | Source code |
| AdjustColorPhi | Man page Source code |
| AdjustEstimatedPlotHeights | Man page Source code |
| AlignBasicPlotParameters | Man page Source code |
| AllEmpty | Man page Source code |
| AnnotatedFeaturesInRegion | Man page Source code |
| AnnotatedFeaturesInRegion_obs | Source code |
| BasicPlotParameters | Man page Source code |
| BuildScrutinizePlotSegmentOrder | Man page Source code |
| CalculateTrackHeight | Man page Source code |
| ChangeColorLightness | Man page Source code |
| CommonPrefix | Man page Source code |
| ConnectIVs | Man page Source code |
| ConstantsDefaults | Man page Source code |
| ConvertCollapsedFormat | Man page Source code |
| ConvertColor | Man page Source code |
| CoordsOfFeatName | Man page Source code |
| CoordsOfFeatName_obs | Source code |
| CoordsOfGenomicScale | Man page Source code |
| DefaultAnnotationOptions | Man page Source code |
| DefaultParameters | Man page Source code |
| DefaultPlotOptions | Man page Source code |
| DeleteNULLs | Man page Source code |
| DeparseOption | Man page Source code |
| Empty2Null | Man page Source code |
| EmptyDf | Man page Source code |
| EmptyDf_obs | Source code |
| EstimatePlotHeights | Man page Source code |
| EvaluateNumericValue | Man page Source code |
| ExamplesSampleSheetsFolder | Man page Source code |
| FillDf | Man page Source code |
| FinalOrganizedAnnotationTextsInPlottedRegion | Man page Source code |
| FinalizePanelsDimensions | Man page Source code |
| FinalizePlottingSegmentOrder | Man page Source code |
| FindNonoverlappingIVs | Man page Source code |
| ForceScaleList | Man page Source code |
| GetAnnotations | Man page Source code |
| GetBigwigDirs | Man page Source code |
| GetBigwigs | Man page Source code |
| GetBinSize | Man page Source code |
| GetColors | Man page Source code |
| GetParameters | Man page Source code |
| GetPlotOptions | Man page Source code |
| GetSamples | Man page Source code |
| GlimpseSession | Man page Source code |
| HandleForcedScaleFromParameters | Man page Source code |
| HandleForcedScaleFromParameters_obs | Source code |
| Hex2Hsl | Man page Source code |
| HorizontalPanelsList | Man page Source code |
| Hsl2Hex | Man page Source code |
| IsColor | Man page Source code |
| IsEmpty | Man page Source code |
| ListDepth | Man page Source code |
| ListExamplesSampleSheets | Man page Source code |
| LoadAndTransformDataForTrack | Man page Source code |
| LoadExcel | Man page Source code |
| LoadIGVSession | Man page Source code |
| LoadTracks | Man page Source code |
| NumberingSpacers | Man page Source code |
| OpenOptionsTable | Man page Source code |
| OrderedSplit | Man page Source code |
| OrganizeAllAnnotationTextsInPlottedRegion | Man page Source code |
| OrganizeAnnotatedFeaturesInRegion | Man page Source code |
| OrganizeAnnotationText | Man page Source code |
| OrganizeAnnotationText_obs | Source code |
| OrganizeOverlappingIVs | Man page Source code |
| OrganizeOverlappingLoci | Man page Source code |
| OrganizeOverlappingLoci_obs | Source code |
| OrganizePanelsDimensions | Man page Source code |
| OrganizedPanelsList | Man page Source code |
| PanelFontSizeList | Man page Source code |
| ParseOption | Man page Source code |
| PlotAnnotation | Man page Source code |
| PlotData | Man page Source code |
| PlotHeader | Man page Source code |
| PlotHeightParameters | Man page Source code |
| PlotMatrix | Man page Source code |
| PlotPanels | Man page Source code |
| PlotScale | Man page Source code |
| PlotSegment | Man page Source code |
| PlotSpacer | Man page Source code |
| PlotVerticalParameters | Man page Source code |
| PlotWidths | Man page Source code |
| PlottingSegmentOrder | Man page Source code |
| PreparePlottingInterface | Man page Source code |
| PrintOutput | Man page Source code |
| ReadInAnnotations | Man page Source code |
| RecommendedFontSizes | Man page Source code |
| RecommendedFontSizes_obs | Source code |
| RegionGRanges | Man page Source code |
| RelativeAnnotationHeight | Man page Source code |
| ScrutinizeExpandAndNameParameter | Man page Source code |
| SegmentTop | Man page Source code |
| Session2Df | Man page Source code |
| Session2xlsx | Man page Source code |
| SortUnlistedSampleNames | Man page Source code |
| UnpackSamples | Man page Source code |
| UpdatePlotVerticalParameters | Man page Source code |
| UpdateTrackVector | Man page Source code |
| YParameters | Man page Source code |
| plot.seqNdisplayRSession | Man page Source code |
| print.seqNdisplayRSession | Man page Source code |
| run_seqNdisplayR_app | Man page Source code |
| seqNdisplay | Man page Source code |
| seqNdisplayRSession | Man page Source code |
