Files in THJlab/seqNdisplayR
A Tool for Customizable and Reproducible Plotting of Sequencing Coverage Data
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
R/seqNdisplayR.R
README.md
fixing_plot_preview.gif
inst/CITATION
inst/extdata/empty_excel.xlsx
inst/extdata/minimal_example_excel_template.xlsx
inst/extdata/minimal_example_excel_template_w_annotation.xlsx
inst/extdata/sNdR_sample_example_elaborate.xlsx
inst/extdata/sNdR_sample_example_simple.xlsx
inst/extdata/variable_defaults_and_help.xlsx
inst/shiny/seqNdisplayR_app.R
man/AdjustColorPhi.Rd
man/AdjustEstimatedPlotHeights.Rd
man/AlignBasicPlotParameters.Rd
man/AnnotatedFeaturesInRegion.Rd
man/BasicPlotParameters.Rd
man/BuildScrutinizePlotSegmentOrder.Rd
man/CalculateTrackHeight.Rd
man/ChangeColorLightness.Rd
man/CommonPrefix.Rd
man/ConnectIVs.Rd
man/ConstantsDefaults.Rd
man/ConvertCollapsedFormat.Rd
man/ConvertColor.Rd
man/CoordsOfFeatName.Rd
man/CoordsOfGenomicScale.Rd
man/DefaultAnnotationOptions.Rd
man/DefaultParameters.Rd
man/DefaultPlotOptions.Rd
man/DeleteNULLs.Rd
man/DeparseOption.Rd
man/Empty2Null.Rd
man/EmptyDf.Rd
man/EstimatePlotHeights.Rd
man/EvaluateNumericValue.Rd
man/ExamplesSampleSheetsFolder.Rd
man/FillDf.Rd
man/FinalOrganizedAnnotationTextsInPlottedRegion.Rd
man/FinalizePanelsDimensions.Rd
man/FinalizePlottingSegmentOrder.Rd
man/FindNonoverlappingIVs.Rd
man/ForceScaleList.Rd
man/GetAnnotations.Rd
man/GetBigwigDirs.Rd
man/GetBigwigs.Rd
man/GetBinSize.Rd
man/GetColors.Rd
man/GetParameters.Rd
man/GetPlotOptions.Rd
man/GetSamples.Rd
man/GlimpseSession.Rd
man/HandleForcedScaleFromParameters.Rd
man/Hex2Hsl.Rd
man/HorizontalPanelsList.Rd
man/Hsl2Hex.Rd
man/IsColor.Rd
man/ListDepth.Rd
man/ListExamplesSampleSheets.Rd
man/LoadAndTransformDataForTrack.Rd
man/LoadExcel.Rd
man/LoadIGVSession.Rd
man/LoadTracks.Rd
man/NumberingSpacers.Rd
man/OpenOptionsTable.Rd
man/OrderedSplit.Rd
man/OrganizeAllAnnotationTextsInPlottedRegion.Rd
man/OrganizeAnnotatedFeaturesInRegion.Rd
man/OrganizeAnnotationText.Rd
man/OrganizeOverlappingIVs.Rd
man/OrganizeOverlappingLoci.Rd
man/OrganizePanelsDimensions.Rd
man/OrganizedPanelsList.Rd
man/PanelFontSizeList.Rd
man/ParseOption.Rd
man/PlotAnnotation.Rd
man/PlotData.Rd
man/PlotHeader.Rd
man/PlotHeightParameters.Rd
man/PlotMatrix.Rd
man/PlotPanels.Rd
man/PlotScale.Rd
man/PlotSegment.Rd
man/PlotSpacer.Rd
man/PlotVerticalParameters.Rd
man/PlotWidths.Rd
man/PlottingSegmentOrder.Rd
man/PreparePlottingInterface.Rd
man/PrintOutput.Rd
man/ReadInAnnotations.Rd
man/RecommendedFontSizes.Rd
man/RegionGRanges.Rd
man/RelativeAnnotationHeight.Rd
man/ScrutinizeExpandAndNameParameter.Rd
man/SegmentTop.Rd
man/Session2Df.Rd
man/Session2xlsx.Rd
man/SortUnlistedSampleNames.Rd
man/UnpackSamples.Rd
man/UpdatePlotVerticalParameters.Rd
man/UpdateTrackVector.Rd
man/YParameters.Rd
man/allempty.Rd
man/isempty.Rd
man/plot.seqNdisplayRSession.Rd
man/print.seqNdisplayRSession.Rd
man/run_seqNdisplayR_app.Rd
man/seqNdisplay.Rd
man/seqNdisplayRSession.Rd
seqNdisplayR.Rproj
test/~$22_08_03_Bug_report.docx
vignette/JRvignette.Rmd
vignette/vignette.Rmd
