Files in TaliaferroLab/FeatureReachR
Extract Enriched Biological Features From RNA-seq Data

.Rbuildignore

.gitignore

DESCRIPTION

NAMESPACE

NAMESPACE_og

R/CISBPRNA_hs_PWM.R R/CISBPRNA_mm_PWM.R R/Length_GC_plot.R R/Motif_by_gene.R R/Motif_compare.R R/RBFOX2_RBNS_compare.R R/RBFOX2_cisbpRNA_compare.R R/RBNS_PWM.R R/RNA_breakdown.R R/Tx2gene.R R/case_genes.R R/compareLengthorGC.R R/ctrl_genes.R R/custom_PWM_list.R R/estimate_motif_from_kmer.R R/filter_Tx.R R/getLengthorGC.R R/get_ctrl_tx.R R/kmer2tree_logo_PWM.R R/kmer_by_gene.R R/kmer_compare.R R/kmer_motif_plot.R R/make_length_df.R R/relate_Kmer_PWM.R

R/sysdata.rda

R/writeSequence.R README.md data-raw/DATASET.R

data/CISBPRNA_hs_PWM.rda

data/CISBPRNA_mm_PWM.rda

data/JASPAR_hs_PWM.rda

data/JASPAR_mm_PWM.rda

data/RBFOX2_RBNS_compare.rda

data/RBFOX2_cisbpRNA_compare.rda

data/RBNS_PWM.rda

data/case_genes.rda

data/ctrl_genes.rda

data/custom_PWM_list.rda

inst/extdata/DownstreamIntron.Control.fasta

inst/extdata/DownstreamIntron.Enhanced.fasta

inst/extdata/example_case_longest_UTR3.fa

inst/extdata/example_case_longest_UTR3.gff3

inst/extdata/example_ctrl_longest_UTR3.fa

inst/extdata/example_ctrl_longest_UTR3.gff3

inst/extdata/gencode.v33.annotation.gff3.gz

inst/extdata/gencode.vM20.annotation.gff3.gz

tests/testthat/testdata/200916_hs_CDS_output.fa

tests/testthat/testdata/200916_hs_CDS_output.gff3

tests/testthat/testdata/200916_hs_promoter_output.gff3

tests/testthat/testdata/200916_hs_whole_output.gff3

tests/testthat/testdata/200916_mm_UTR3_output.fa

tests/testthat/testdata/200916_mm_UTR5_output.fa

tests/testthat/testdata/200916_mm_UTR5_output.gff3

tests/testthat/testdata/200916_mm_promoter_output.fa

tests/testthat/testdata/dmTxDb

tests/testthat/testdata/hs_CDS_test.fa

tests/testthat/testdata/hs_CDS_test.gff3

tests/testthat/testdata/hs_promoter_test.gff3

tests/testthat/testdata/hs_whole_test.gff3

tests/testthat/testdata/mm_UTR3_test.fa

tests/testthat/testdata/mm_UTR5_test.fa

tests/testthat/testdata/mm_UTR5_test.gff3

tests/testthat/testdata/mm_promoter_test.fa

tests/testthat/testdata/partial_vM20.gff3

utrtools.Rproj

vignettes/.gitignore

vignettes/Easy_Sequence_Analysis.Rmd vignettes/Getting_Sequences_to_Analyze.Rmd

TaliaferroLab/FeatureReachR documentation built on Aug. 15, 2021, 2:21 p.m.

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TaliaferroLab/FeatureReachR
Extract Enriched Biological Features From RNA-seq Data

Files in TaliaferroLab/FeatureReachR
Extract Enriched Biological Features From RNA-seq Data

R Package Documentation

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TaliaferroLab/FeatureReachR Extract Enriched Biological Features From RNA-seq Data

Files in TaliaferroLab/FeatureReachR Extract Enriched Biological Features From RNA-seq Data

R Package Documentation

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We want your feedback!

TaliaferroLab/FeatureReachR
Extract Enriched Biological Features From RNA-seq Data

Files in TaliaferroLab/FeatureReachR
Extract Enriched Biological Features From RNA-seq Data