R/RBFOX2_cisbpRNA_compare.R

In TaliaferroLab/FeatureReachR: Extract Enriched Biological Features From RNA-seq Data

#' cisbpRNA motif comparisions for RBFOX2 data
#'
#' This is example output of \code{PWM_compare} with the CISBPRNA_hs PWM list.
#' Used in the easy sequence analysis vignette.
#'
#' @format A table
#'  \describe{
#'   \item{motif}{motif name with RBP name}
#'   \item{case}{number of motif counts}
#'   \item{ctrl}{number of motif counts}
#'   \item{case_freq}{number of motif counts normalized to sequence length}
#'   \item{ctrl_freq}{number of motif counts normalized to sequence length}
#'   \item{case_tot}{the total of all other motif occurances}
#'   \item{ctrl_tot}{the total of all other motif occurances}
#'   \item{log2FC}{the log2 of case_freq / ctrl_freq}
#'   \item{pval}{calculated via wilcox.test}
#'   \item{p_adj}{Adjusted p-value by method = "BH"}
#'   }
#' @source output from \code{PWM_compare(RBFOX_case, RBFOX_ctrl, "CISBPRNA_hs")}
#' in easy sequence analysis vignette.
#'
'RBFOX2_cisbpRNA_compare'