loadData: Load the fractionated proteomics data
In TanerArslan/SubCellBarCode: SubCellBarCode: Integrated workflow for robust mapping and visualizing whole human spatial proteome
Description
Usage
Arguments
Value
Examples
Description
Sampled median normalized TMT ratios are checked if
there is any "NA" valeus. If any, the corresponding
row is filtered out. Later, the data is normalized by taking log2.
Usage
1
loadData(protein.data)
Arguments
protein.data
data.frame; fractionated proteomics data where
data contains 10 columns of duplicated 5 fractionations and
rownames must be gene-centric protein names
Value
protein.data.df
Examples
1
2
3
4
{
df <- loadData(SubCellBarCode::hcc827Ctrl[1:20,])
}
TanerArslan/SubCellBarCode documentation built on June 7, 2021, 9 a.m.
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Description Usage Arguments Value Examples
Description
Sampled median normalized TMT ratios are checked if there is any "NA" valeus. If any, the corresponding row is filtered out. Later, the data is normalized by taking log2.
Usage
1 | loadData(protein.data)
|
Arguments
protein.data |
data.frame; fractionated proteomics data where data contains 10 columns of duplicated 5 fractionations and rownames must be gene-centric protein names |
Value
protein.data.df
Examples
1 2 3 4 | {
df <- loadData(SubCellBarCode::hcc827Ctrl[1:20,])
}
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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