sumProbability: Sum compartment test data probabilities to neighborhood...

In TanerArslan/SubCellBarCode: SubCellBarCode: Integrated workflow for robust mapping and visualizing whole human spatial proteome

Description

Compartment levels classifications on the test data are summed up to associated neighborhood levels. It is a helper function.

Usage

sumProbability(df)

Arguments

df	data.frame; test data classifications at the neighborhood level and probablity vectors for each protein.

Value

summed.df

Examples

{

#create mock data
df <- data.frame(Protein = "TP53",
svm.pred = "N1",
S1 = as.numeric(0.02),
S2 = as.numeric(0.02),
S3 = as.numeric(0.02),
S4 = as.numeric(0.02),
N1 = as.numeric(0.72),
N2 = as.numeric(0.02),
N3 = as.numeric(0.02),
N4 = as.numeric(0.02),
C1 = as.numeric(0.02),
C2 = as.numeric(0.02),
C3 = as.numeric(0.02),
C4 = as.numeric(0.02),
C5 = as.numeric(0.02),
M1 = as.numeric(0.02),
M2 = as.numeric(0.02))

rownames(df) <- "TP53"

sum.df <- sumProbability(df)

}

TanerArslan/SubCellBarCode documentation built on June 7, 2021, 9 a.m.