Files in TeamPerie/CellDestiny
An RShiny application for the visualization and analysis of single cell lineage-tracing data
.Rbuildignore
.gitignore
CellDestiny.Rproj
DESCRIPTION
NAMESPACE
R/Launch_app.R
R/functions.R
R/server.R
R/ui.R
R/webApp/.DS_Store
R/webApp/functions.R
R/webApp/images/QCDotEx.png
R/webApp/images/RUDotEx.png
R/webApp/images/barplot.png
R/webApp/images/boxplot.png
R/webApp/images/contrib1.png
R/webApp/images/contrib2.png
R/webApp/images/cumulativeDiagram.png
R/webApp/images/dotplot.png
R/webApp/images/filledBarplot.png
R/webApp/images/filledBarplotEx.png
R/webApp/images/heatmap.png
R/webApp/images/logoCelldestiny.jpg
R/webApp/images/logoCurie.png
R/webApp/images/nonCumulativeHist.png
R/webApp/images/ternaryplot.png
R/webApp/rsconnect/shinyapps.io/louisa-hadjabed/CellDestiny.dcf
R/webApp/rsconnect/shinyapps.io/perie-team/CellDestiny.dcf
R/webApp/server.R
R/webApp/testData/.DS_Store
R/webApp/testData/LentiviralBarcodingData/.DS_Store
R/webApp/testData/LentiviralBarcodingData/Analysis_data/Analysis_matrix_Mouse_Lung_cDCs.csv.gz
R/webApp/testData/LentiviralBarcodingData/Analysis_data/Analysis_matrix_Mouse_Lung_cDCs_metadata.csv.gz
R/webApp/testData/LentiviralBarcodingData/QC_data/QC_duplicate_matrix_Mouse_Lung_cDCs.csv.gz
R/webApp/testData/LentiviralBarcodingData/QC_data/QC_duplicate_matrix_Mouse_Lung_cDCs_metadata.csv.gz
R/webApp/ui.R
README.md
UserManual/app/.DS_Store
UserManual/app/User_manual_for_QC_and_analysis.Rmd
UserManual/app/User_manual_for_QC_and_analysis.pdf
UserManual/app/User_manual_for_QC_and_analysis_JC.Rmd
UserManual/app/User_manual_for_QC_and_analysis_JC.pdf
UserManual/package/.DS_Store
UserManual/package/1.User_manual_for_QC.Rmd
UserManual/package/1.User_manual_for_QC.pdf
UserManual/package/2.User_manual_for_analysis.Rmd
UserManual/package/2.User_manual_for_analysis.pdf
images/Load_data.png
images/QCDotEx.png
images/RUDotEx.png
images/barplot.png
images/boxplot.png
images/contrib1.png
images/contrib2.png
images/cumulativeDiagram.png
images/dotplot.png
images/duplicates_check.png
images/filledBarplot.png
images/filledBarplotEx.png
images/heatmap.png
images/logoCelldestiny.jpg
images/logoCurie.png
images/meta_script.png
images/nonCumulativeHist.png
images/repeat_use.png
images/ternaryplot.png
man/BcAbundance.Rd
man/CheckValueLengths.Rd
man/ColToRowNames.Rd
man/DeleteLevels.Rd
man/ListToDf.Rd
man/LongSubMatrix.Rd
man/LongToWideSubMatrix.Rd
man/MakeBarcodeFrequenciesMatrix.Rd
man/MakeBiasPerCatMatrix.Rd
man/MakeBiasPerTypeMatrix.Rd
man/MakeCategoryMatrices.Rd
man/MakeCumulativeDiagramMatrix.Rd
man/MakeDotPlotMatrix.Rd
man/MakeDuplicatesMatrix.Rd
man/MakeHeatmapMatrix.Rd
man/MakeMetadata.Rd
man/MakePieChartMatrix.Rd
man/MakeRepeatUseMatrix.Rd
man/MakeTernaryMatrix.Rd
man/NormByBcAbundance.Rd
man/PlotBarcodeFrequencies.Rd
man/PlotBiasPerCat.Rd
man/PlotBiasPerType.Rd
man/PlotCategories.Rd
man/PlotCorrelogram.Rd
man/PlotCumulativeDiagram.Rd
man/PlotDiversity.Rd
man/PlotDuplicates.Rd
man/PlotHeatmap.Rd
man/PlotPieChart.Rd
man/ReformatQCmatrix.Rd
man/SumVars.Rd
man/WideToLong.Rd
man/calculDiversity.Rd
man/plotCategoryCounts.Rd
man/plotDotplot.Rd
man/plotRepeatUse.Rd
man/plotTernaryPlot.Rd
testData/LentiviralBarcodingData/.DS_Store
testData/LentiviralBarcodingData/Analysis_data/Analysis_matrix_Mouse_Lung_cDCs.csv.gz
testData/LentiviralBarcodingData/Analysis_data/Analysis_matrix_Mouse_Lung_cDCs_metadata.csv.gz
testData/LentiviralBarcodingData/QC_data/QC_duplicate_matrix_Mouse_Lung_cDCs.csv.gz
testData/LentiviralBarcodingData/QC_data/QC_duplicate_matrix_Mouse_Lung_cDCs_metadata.csv.gz
