ReformatQCmatrix: Reformat QC input table

In TeamPerie/CellDestiny: An RShiny application for the visualization and analysis of single cell lineage-tracing data

Reformat QC input table

Description

Reformat QC input table

Usage

ReformatQCmatrix(
  matrix,
  metadata,
  dupVar,
  dupVal,
  sampleNameFieldsep = "_",
  transformation = "arcsin",
  correlation = "pearson"
)

Arguments

matrix,	a wide dataframe
metadata,	the metadata
dupVar,	duplicate variable name
dupVal,	duplicate values
sampleNameFieldsep,	sample name variable separatorn default "_"
transformation,	transformation to use, default is "arcsin". Other "log10(x+1)" or "none"
correlation,	correlation method to use, "pearson" (default) or "spearman"

Value

a long format QC matrix

TeamPerie/CellDestiny documentation built on July 4, 2022, 8:40 a.m.