MakeCategoryMatrices: Make catergory matrices

In TeamPerie/CellDestiny: An RShiny application for the visualization and analysis of single cell lineage-tracing data

Make catergory matrices

Description

Make catergory matrices

Usage

MakeCategoryMatrices(
  matrixWide,
  metadata,
  indivVar,
  indivVal,
  cellTypeVar,
  cellTypeVal,
  threshold = 10,
  condition = "no",
  conditionVal = ""
)

Arguments

matrixWide,	barcode count matrix
metadata,	the metadata corresponding to the matrix
indivVar,	name of variable defining individuals
indivVal,	list of selected individuals
cellTypeVar,	list of sected variables
cellTypeVal,	list of sected values
threshold,	lineage bias minimum threshold (%), default is 10
condition,	is there a condtion, default is "no"
conditionVal,	condition value (only one accepted), default is ""

Value

a list of two matrices, the category for PlotCategories function and barcode count matrix for PlotCategoryCount function

TeamPerie/CellDestiny documentation built on July 4, 2022, 8:40 a.m.