MakeBiasPerTypeMatrix: Make bias matrix

In TeamPerie/CellDestiny: An RShiny application for the visualization and analysis of single cell lineage-tracing data

Make bias matrix

Description

Make bias matrix

Usage

MakeBiasPerTypeMatrix(
  matrix,
  metadata,
  indivVar,
  indivVal,
  cellTypeVar,
  cellTypeVal,
  condition = "no",
  conditionVal = ""
)

Arguments

matrix,	barcode count matrix
metadata,	the metadata corresponding to the matrix
indivVar,	name of variable defining individuals
indivVal,	list of selected individuals
cellTypeVar,	list of sected variables
cellTypeVal,	list of sected values, at least 2.
condition,	is there a condtion, default is "no"
conditionVal,	condition value (only one accepted), default is ""

Value

a list of two matrices, the category for PlotCategories function and barcode count matrix for PlotCategoryCount function

TeamPerie/CellDestiny documentation built on July 4, 2022, 8:40 a.m.