build_default_option_list: Build default binaries config

In TearsWillFall/ULPwgs: An implementation of a wrapper for estimating tumor fraction in ultra-low-pass whole genome sequencing (ULP-WGS) for cell-free DNA in GNU/Unix based systems

Build default binaries config

Description

Build default binaries config

Usage

build_default_option_list(
  options = list(project_id = "", patient_id = "", sample_id = "", sequencing_type =
    c("BULK", "SINGLE_CELL"), method_type = c("WGS", "CAPTURE", "EXOME", "RNASEQ"),
    method_version = list(WGS = c("HC", "LP", "ULP"), CAPTURE = c("PCF_V1", "PCF_V2",
    "PCF_V3"), EXOME = c("ALL_EXOME"), RNASEQ = list("ALL_TRANSCRIPTOME")), reference =
    c("HG19", "HG38"), library_id = "", flowcell_id = "", lane_id = "")
)

Arguments

options

List with options for each variable

TearsWillFall/ULPwgs documentation built on April 18, 2024, 3:45 p.m.