build_instrument_id: Build dataframe with matched instrument_id patterns and...

In TearsWillFall/ULPwgs: An implementation of a wrapper for estimating tumor fraction in ultra-low-pass whole genome sequencing (ULP-WGS) for cell-free DNA in GNU/Unix based systems

Build dataframe with matched instrument_id patterns and instrument names

Description

Build dataframe with matched instrument_id patterns and instrument names

Usage

build_instrument_id(
  instruments = list(instrument = c("MiSeq", "Genome Analyzer IIx", "MiSeq",
    "HiSeq 1500", "HiSeq 1500", "HiSeq 2500", "HiSeq 2500", "HiSeq 3000", "HiSeq 3000",
    "HiSeq 4000", "HiSeq X", "NextSeq", "NextSeq", "MiniSeq", "NovaSeq 6000"), pattern =
    c("HWI-M[0-9]{4}$", "HWUSI", "M[0-9]{5}$", "HWI-C[0-9]{5}$", "C[0-9]{5}$",
    "HWI-D[0-9]{5}$", "D[0-9]{5}$", "J[0-9]{5}$", "K[0-9]{5}$", "K[0-9]{5}$",
    "E[0-9]{5}$", "NB[0-9]{6}$", "NS[0-9]{6}$", "MN[0-9]{5}$", "A[0-9]{5}$"))
)

Arguments

instruments

List with flowcell_id, flowcell_type and instrument information

TearsWillFall/ULPwgs documentation built on April 18, 2024, 3:45 p.m.