build_default_sif_list: Build default sif list

In TearsWillFall/ULPwgs: An implementation of a wrapper for estimating tumor fraction in ultra-low-pass whole genome sequencing (ULP-WGS) for cell-free DNA in GNU/Unix based systems

Build default sif list

Description

Build default sif list

Usage

build_default_sif_list(
  sifs = list(sif_clonet = list(V2 =
    "/lustre/scratch/scratch/regmova/Singularity_Images/pcf_select_v2_14_11_2022.sif", V3
    = "/lustre/scratch/scratch/regmova/Singularity_Images/pcf_select_v3_14_11_2022.sif"),
    sif_preprocess =
    "/lustre/scratch/scratch/regmova/Singularity_Images/preProcess_latest.sif", sif_aa =
    "/lustre/scratch/scratch/regmova/Singularity_Images/ampliconsuite-pipeline.sif",
    sif_gatk = "/lustre/scratch/scratch/regmova/Singularity_Images/gatk_latest.sif",
    sif_cnvkit = "/lustre/scratch/scratch/regmova/Singularity_Images/cnvkit_latest.sif")
)

Arguments

sifs	List of sif files

TearsWillFall/ULPwgs documentation built on April 18, 2024, 3:45 p.m.