TheJacksonLaboratory/CAPE
Combined Analysis of Pleiotropy and Epistasis for Diversity Outbred Mice

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Vignettes
Functions
207
Source code
119
Man pages
106
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TheJacksonLaboratory/CAPE: Combined Analysis of Pleiotropy and Epistasis for Diversity Outbred Mice
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API

API for TheJacksonLaboratory/CAPE
Combined Analysis of Pleiotropy and Epistasis for Diversity Outbred Mice

Global functions
Cape Man page
Cape-class Man page
bin_curve Man page Source code
bin_vector Man page Source code
calc_delta_errors Man page Source code
calc_emp_p Man page Source code
calc_m Man page Source code
calc_p Man page Source code
cape2mpp Man page Source code
center_std Man page Source code
check_bad_markers Man page Source code
check_communities Man page Source code
check_geno Man page Source code
check_underscore Man page Source code
chunkV Man page Source code
colors_from_values Man page Source code
compare_markers Man page Source code
consec_pairs Man page Source code
delete_underscore Man page Source code
direct_influence Man page Source code
draw_pie Man page Source code
error_prop Man page
exp_color_fun Man page Source code
flatten_array Man page Source code
genome_wide_threshold_1D Man page Source code
get_allele_colors Man page Source code
get_block_allele Man page Source code
get_circle Man page Source code
get_col_num Man page
get_color Man page Source code
get_color2 Man page Source code
get_concent_circ Man page Source code
get_covar Man page Source code
get_eigentraits Man page Source code
get_geno Man page Source code
get_geno_dim Man page Source code
get_geno_with_covar Man page Source code
get_interaction_error Man page Source code
get_layout_mat Man page Source code
get_line Man page Source code
get_linearly_independent Man page Source code
get_marker_chr Man page Source code
get_marker_covar Man page Source code
get_marker_idx Man page Source code
get_marker_location Man page Source code
get_marker_name Man page Source code
get_marker_num Man page Source code
get_network Man page Source code
get_pairs_for_pairscan Man page Source code
get_pheno Man page Source code
get_stats_multiallele Man page Source code
hist_pheno Man page Source code
image_with_text Man page Source code
impute_missing_geno Man page Source code
kin_adjust Man page Source code
kinship Man page Source code
linkage_blocks_network Man page Source code
load_input_and_run_cape Man page Source code
marker2covar Man page Source code
my_image_plot Man page Source code
norm_pheno Man page Source code
one_pairscan_parallel Man page Source code
one_singlescanDO Man page Source code
pair_matrix Man page Source code
pairscan Man page Source code
pairscan_kin Man page Source code
pairscan_noKin Man page Source code
pairscan_null Man page Source code
pairscan_null_kin Man page Source code
pheatmap_generate_breaks Man page
pheatmap_scale_colours Man page
pheno2covar Man page Source code
plink2cape Man page Source code
plot_bars Man page Source code
plot_effects Man page Source code
plot_full_network Man page Source code
plot_int_heat Man page Source code
plot_lines Man page Source code
plot_network Man page Source code
plot_pairscan Man page Source code
plot_pheno_cor Man page Source code
plot_points Man page Source code
plot_singlescan Man page Source code
plot_svd Man page Source code
plot_trait_circ Man page Source code
plot_variant_influences Man page Source code
qnorm_pheno Man page Source code
qtl2_to_cape Man page Source code
read_parameters Man page Source code
read_population Man page Source code
remove_ind Man page Source code
remove_kin_ind Man page Source code
remove_markers Man page Source code
remove_missing_genotype_data Man page Source code
remove_unused_markers Man page Source code
report_progress Man page Source code
rotate_mat Man page Source code
run_cape Man page Source code
rz_transform Man page
segment_region Man page Source code
select_eigentraits Man page Source code
select_markers_for_pairscan Man page Source code
select_pheno Man page Source code
singlescan Man page Source code
sort_by_then_by Man page Source code
write_population Man page Source code
write_variant_influences Man page Source code
TheJacksonLaboratory/CAPE documentation built on Feb. 12, 2024, 4:32 p.m.

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