Theob0t/scEasyPip: Automated Seurat Pipeline for scRNA-seq analysis

Automated scRNA-seq analysis using 10x output and the Seurat package. Perform Quality Control, Normalization, Dimensionality Reduction, Visualization, Clustering and DGE using Seurat. Assign cell-types to cluster based on your own markers. Merge or integrated Seurat objects. Cluster cells using Transcription Factors activity with Viper and Dorothea packages.

install.packages("remotes")
remotes::install_github("Theob0t/scEasyPip")