getAssignmentsVectors: Assign clusters to cell identities from the consensus file...
In Theob0t/scEasyPip: Automated Seurat Pipeline for scRNA-seq analysis
Description
Usage
Arguments
Value
Description
Assign clusters to cell identities from the consensus file provided
Usage
1
getAssignmentsVectors(consensus, markers)
Arguments
consensus
Consensus dataframe (2 columns per cell-type labelled
cell-type e.g., 'Stem-Cell', and FC_cell-type e.g., 'FC_Stem-Cell')
markers
Markers dataframe (FindAllMarkers() output)
Value
Return two vectors with cell assignments.
One using the max number of overlap, and one using max total FoldChange.
Theob0t/scEasyPip documentation built on Dec. 18, 2021, 4:10 p.m.
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Description Usage Arguments Value
Description
Assign clusters to cell identities from the consensus file provided
Usage
1 | getAssignmentsVectors(consensus, markers)
|
Arguments
consensus |
Consensus dataframe (2 columns per cell-type labelled cell-type e.g., 'Stem-Cell', and FC_cell-type e.g., 'FC_Stem-Cell') |
markers |
Markers dataframe (FindAllMarkers() output) |
Value
Return two vectors with cell assignments. One using the max number of overlap, and one using max total FoldChange.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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