RunTfPipeline: Run the Seurat Pipeline using TF activity (Dorothea + Viper)

In Theob0t/scEasyPip: Automated Seurat Pipeline for scRNA-seq analysis

Description

This function uses Dorothea and Viper to cluster single-cells by TF activity

Usage

RunTfPipeline(
  data.dir = NULL,
  object = NULL,
  species = "mouse",
  dorothea.confidence = c("A", "B", "C"),
  ...
)

Arguments

object	A Seurat object
species	Mouse or human
dorothea.confidence	Confidence levels of regulons

Value

A processed Seurat Object along with visualization plots

Theob0t/scEasyPip documentation built on Dec. 18, 2021, 4:10 p.m.