runNormalization: Run Normalization using Seurat pipeline

In Theob0t/scEasyPip: Automated Seurat Pipeline for scRNA-seq analysis

Description

Run Normalization using Seurat pipeline

Usage

runNormalization(
  object,
  sctransform,
  logtransform,
  tf.activity,
  vars.to.regress
)

Arguments

object	A Seurat object
sctransform	If set, use SCTransform normalization
logtransform	Run the default log-normalization from Seurat
tf.activity	Run Seurat pipeline on TF activity
vars.to.regress	Variables to regress out in a second non-regularized linear regression. For example, percent.mito. Default is NULL

Value

A normalized Seurat Object

Theob0t/scEasyPip documentation built on Dec. 18, 2021, 4:10 p.m.