Man pages for Theob0t/scEasyPip
Automated Seurat Pipeline for scRNA-seq analysis
| checkInputs | Check inputs for FindCelltypes function |
| FindCelltype | Identify cell types based on a user defined consensus markers |
| getAssignmentsVectors | Assign clusters to cell identities from the consensus file... |
| MergeObject | Merge a list of rds file Seurat object |
| Read10xData | Create Seurat Object from sparse data matrices provided by... |
| runCellCycle | Perform cell cycle scoring |
| runClustering | Perform clustering on Seurat object |
| RunIntegration | Run Seurat Anchors Integration Pipeline |
| runNormalization | Run Normalization using Seurat pipeline |
| RunSeurat | Run Seurat Pipeline |
| RunTf | Create Dorothea Assay with TF activity computed using Viper |
| RunTfPipeline | Run the Seurat Pipeline using TF activity (Dorothea + Viper) |
| SavePlot | Save output plot in png format |
