Description Author(s) References See Also
The poolSeq
package provides a variety of functions to simulate and analyze Pool-seq data, including estimation of the effective population size, selection coefficients and dominance parameters.
Thomas Taus
Maintainer: Thomas Taus <7homas.7aus@gmail.com>
Waples R. S.: A generalized approach for estimating effective population size from temporal changes in allele frequency, Genetics 1989, 121, 379–391.
Agresti A.: Categorical data analysis (second edition). New York: Wiley 2002
Jorde P. E. and Ryman N.: Unbiased estimator for genetic drift and effective population size, Genetics 2007, 177 927–935.
Frick K., Munk, A. and Sieling, H.: Multiscale Change-Point Inference, Journal of the Royal Statistical Society: Series B 2014, 76, 495-580.
Futschik A., Hotz T., Munk A. and Sieling H.: Multiresolution DNA partitioning: statistical evidence for segments, Bioinformatics 2014, 30, 2255-2262.
Jónás A., Taus T., Kosiol C., Schlötterer C. & Futschik A.: Estimating effective population size from temporal allele frequency changes in experimental evolution, manuscript in preparation.
wf.traj
, sample.alleles
, estimateNe
, cmh.test
, chi.sq.test
and read.sync
.
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