identifyTSSonChromAndStrand: Indentify TSS ids for given chromosome and strand

In Timothy-Barry/coproanalysis: Analyze CoPRO and Related Data

Description

Indentify TSS ids for given chromosome and strand

Usage

identifyTSSonChromAndStrand(pos, thresh, startIdx)

Arguments

pos	the ordered vector of ID5 ids
thresh	the distance over which TSNs are clustered into TSSs
startIdx	the number used to start labelling the TSSs

Value

a vector of TSS ids

Examples

pos <- c(5, 6, 6, 8, 19, 21, 21, 23, 37, 40, 51, 80, 83)
thresh <- 5
groups <- identifyTSSonChromAndStrand(pos, thresh, 1)
plot(1:length(pos), pos, col = groups, pch = 19, xlab = "index", ylab = "position")
pos <- c(1, 20, 21, 22, 23, 50)
groups <- identifyTSSonChromAndStrand(pos, thresh, 1)
plot(1:length(pos), pos, col = groups, pch = 19, xlab = "index", ylab = "position")

Timothy-Barry/coproanalysis documentation built on Feb. 12, 2020, 7:33 a.m.