TomMayo/M3Ddevel: (development for M3D) Identifies differentially methylated regions across testing groups
Version 1.5.0

(This package serves as development for the M3D Bioconductor package) This package identifies statistically significantly differentially methylated regions of CpGs. It uses kernel methods (the Maximum Mean Discrepancy) to measure differences in methylation profiles, and relates these to inter-replicate changes, whilst accounting for variation in coverage profiles.

Getting started

Package details

AuthorTom Mayo
Bioconductor views Coverage CpGIsland DNAMethylation DifferentialMethylation
MaintainerTom Mayo <[email protected]>
LicenseArtistic License 2.0
Version1.5.0
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("TomMayo/M3Ddevel")
TomMayo/M3Ddevel documentation built on May 10, 2017, 5:42 p.m.