Man pages for TomMayo/M3Ddevel
(development for M3D) Identifies differentially methylated regions across testing groups

CpGsDemoToy data for the package - 1000 CpG regions to be tested in a...
determineGroupCompsCreates strings of sample pair comparisons
findCompsFinds columns in the M3D test-statistic matrix
M3Ddevel'M3Ddevel': Uses the M3D method to find DMRs in bisufite...
M3D-packageNon-parametric statistical testing
M3D_ParaComputes the components of the M3D test-statistic over all...
M3D_Para_liteComputes the components of the M3D test-statistic over all...
M3D_SingleComputes the components of the M3D test-statistic over one...
M3D_WrapperComputes the components of the M3D test-statistic over all...
M3D_Wrapper_liteComputes the components of the M3D test-statistic over all...
median_freqFinds the median
medianFreqFinds the median
MMDlistDemoToy data for the package - the output of the M3D_Wrapper...
PDemoToy data for the package - the output of the pvals function.
plotMethProfilePlots methylation profiles over a specific region
pvalsComputes p-values
pvals_liteComputes p-values
readENCODEdataReads in ENCODE RRBS data
rrbsDemoToy data for the package - methylation data for cytosines...
TomMayo/M3Ddevel documentation built on May 10, 2017, 5:42 p.m.