findComps: Finds columns in the M3D test-statistic matrix
In TomMayo/M3Ddevel: (development for M3D) Identifies differentially methylated regions across testing groups
Description
Usage
Arguments
Value
Author(s)
Description
Returns the columns of the test-statistic matrix that refer to specific
samples. This is not intended to be called directly by the user.
Usage
1
findComps(MMD, samples)
Arguments
MMD
A matrix containing the M3D test-statistic, the difference the
full and methylation blind metrics,
for each region in the CpGs object. Each column is a comparison between two
samples, which are described in the column names.
samples
A vector of sample pairs of the form 'sample1 vs sample2' as
returned from determineGroupComps
Value
Returns the indices of the M3D test-statistic components that contain
the sample pair comparisons in 'samples'
Author(s)
Tom Mayo t.mayo@ed.ac.uk
TomMayo/M3Ddevel documentation built on May 9, 2019, 4:53 p.m.
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Description Usage Arguments Value Author(s)
Description
Returns the columns of the test-statistic matrix that refer to specific samples. This is not intended to be called directly by the user.
Usage
1 | findComps(MMD, samples)
|
Arguments
MMD |
A matrix containing the M3D test-statistic, the difference the full and methylation blind metrics, for each region in the CpGs object. Each column is a comparison between two samples, which are described in the column names. |
samples |
A vector of sample pairs of the form 'sample1 vs sample2' as returned from determineGroupComps |
Value
Returns the indices of the M3D test-statistic components that contain the sample pair comparisons in 'samples'
Author(s)
Tom Mayo t.mayo@ed.ac.uk
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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