calculate_distance_to_margin: calculate the distances of each cell to the margin
In TrigosTeam/SPIAT: Spatial Image Analysis of Tissues
View source: R/calculate_distance_to_tumour_margin.R
calculate_distance_to_margin R Documentation
calculate the distances of each cell to the margin
Description
Returns a SPE object with the minimum distance from cells of
interest (CoI) to the identified bordering cells.
Usage
calculate_distance_to_margin(spe_object)
Arguments
spe_object
SpatialExperiment object. It should contain information of
the detected bordering cells ('colData()' has 'Region' column).
Value
An spe_object with a 'Distance.To.Border' column is returned.
Examples
spe_border <- identify_bordering_cells(SPIAT::defined_image,
reference_cell = "Tumour", feature_colname = "Cell.Type", n_to_exclude = 10)
spe_dist <- calculate_distance_to_margin(spe_border)
TrigosTeam/SPIAT documentation built on Aug. 22, 2024, 7:50 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/calculate_distance_to_tumour_margin.R
| calculate_distance_to_margin | R Documentation |
calculate the distances of each cell to the margin
Description
Returns a SPE object with the minimum distance from cells of interest (CoI) to the identified bordering cells.
Usage
calculate_distance_to_margin(spe_object)
Arguments
spe_object |
SpatialExperiment object. It should contain information of the detected bordering cells ('colData()' has 'Region' column). |
Value
An spe_object with a 'Distance.To.Border' column is returned.
Examples
spe_border <- identify_bordering_cells(SPIAT::defined_image,
reference_cell = "Tumour", feature_colname = "Cell.Type", n_to_exclude = 10)
spe_dist <- calculate_distance_to_margin(spe_border)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.