plot_cell_percentages: plot_cell_percentages

In TrigosTeam/SPIAT: Spatial Image Analysis of Tissues

plot_cell_percentages

Description

Plots cells proportions as barplots.

Usage

plot_cell_percentages(
  cell_proportions,
  cells_to_exclude = NULL,
  cellprop_colname = "Proportion_name"
)

Arguments

cell_proportions	Data Frame. Output from calculate_cell_proportions.
cells_to_exclude	String Vector. Markers to exclude.
cellprop_colname	String. Column to use for y axis names. Default is "Proportion_name".

Value

A plot is returned

Examples

p_cells <- calculate_cell_proportions(SPIAT::simulated_image)
plot_cell_percentages(p_cells)

TrigosTeam/SPIAT documentation built on Aug. 22, 2024, 7:50 p.m.