plot_average_intensity: plot_average_intensity

In TrigosTeam/SPIAT: Spatial Image Analysis of Tissues

plot_average_intensity

Description

Takes in a vector or radii and calculates the average intensity of a target marker using average_intensity function. It plots the intensity level as a line graph.

Usage

plot_average_intensity(spe_object, reference_marker, target_marker, radii)

Arguments

spe_object	SpatialExperiment object in the form of the output of format_image_to_spe.
reference_marker	String specifying the reference marker.
target_marker	String specifying the marker to calculate its average intensity.
radii	Numeric Vector specifying the search radius around reference cells.

Value

A plot is returned

Examples

plot_average_intensity(SPIAT::simulated_image, reference_marker="Immune_marker3", 
target_marker="Immune_marker2", c(30, 35, 40, 45, 50, 75, 100))

TrigosTeam/SPIAT documentation built on Aug. 22, 2024, 7:50 p.m.