marker_intensity_boxplot: marker_intensity_boxplot

In TrigosTeam/SPIAT: Spatial Image Analysis of Tissues

marker_intensity_boxplot

Description

Produces boxplots of marker levels for cells phenotyped as being positive for the marker, and those that where phenotyped as being negative.

Usage

marker_intensity_boxplot(spe_object, marker, feature_colname = "Phenotype")

Arguments

spe_object	SpatialExperiment object in the form of the output of format_image_to_spe.
marker	String. Marker being queried.
feature_colname	String. Column containing marker information

Value

A plot is returned

Examples

marker_intensity_boxplot(SPIAT::simulated_image, "Immune_marker1")

TrigosTeam/SPIAT documentation built on Aug. 22, 2024, 7:50 p.m.