API for UNCDEPENdLab/fmri.pipeline
Analysis of fMRI Data on HPC clusters
| Global functions | |
|---|---|
| R_batch_job | Man page |
| R_batch_sequence | Man page |
| add_baseline_regressors | Man page Source code |
| add_custom_feat_syntax | Man page Source code |
| add_tracked_job_parent | Man page Source code |
| afni_3dclusterize | Man page |
| afni_3dclustsim | Man page |
| afni_3dclustsim_list | Man page |
| afni_3dfwhmx | Man page |
| afni_3dfwhmx_list | Man page |
| afni_whereami | Man page |
| as.character.formula | Man page Source code |
| as_dhms | Man page |
| backproject_medusa | Source code |
| bl1_build_events | Man page Source code |
| bl1_build_models | Man page Source code |
| bl1_build_signals | Man page Source code |
| bl1_get_cols | Man page Source code |
| bl1_specify_wi_factors | Source code |
| build_3dclustsim_permutation | Man page Source code |
| build_beta_extraction | Man page |
| build_design_matrix | Man page Source code |
| build_fwe_correction | Man page Source code |
| build_l1_models | Man page Source code |
| build_l2_models | Man page Source code |
| build_l3_models | Man page |
| calculate_subject_exclusions | Man page Source code |
| check_nums | Man page |
| choose_glm_models | Man page |
| choose_glm_set | Man page Source code |
| cleanup_glm_pipeline | Man page |
| cleanup_regressor | Man page Source code |
| cluster_job_submit | Man page Source code |
| cluster_submit_shell_jobs | Man page Source code |
| combine_feat_l3_to_afni | Man page Source code |
| compress_mts_pca | Man page Source code |
| compute_spike_regressors | Man page Source code |
| concat_design_runs | Man page Source code |
| convolve_cpp | Man page Source code |
| convolve_dcv_hrf | Man page Source code |
| convolve_double_gamma | Man page Source code |
| convolve_regressor | Man page Source code |
| create_fwe_spec | Man page Source code |
| create_new_hi_model | Man page Source code |
| create_tracking_db | Man page Source code |
| deconvolve_nlreg | Man page Source code |
| deconvolve_nlreg_resample | Man page Source code |
| determine_run_volumes | Source code |
| detrendts | Man page Source code |
| dhms | Man page |
| do_convolve | Man page Source code |
| dsigmoid | Man page Source code |
| enforce_glms_complete | Man page |
| error | Source code Source code Source code |
| event_lock_ts | Man page Source code |
| events_from_spec | Source code |
| evt_align_decon_files | Man page Source code |
| expand_signal | Source code |
| export_glm_config | Man page Source code |
| extract_bids_info | Man page Source code |
| extract_fsl_betas | Man page Source code |
| extract_glm_betas | Source code |
| extract_glm_betas_in_mask | Man page Source code |
| feat_stats_to_brik | Man page Source code |
| fields_from_spec | Man page Source code |
| file_ext | Man page Source code |
| file_sans_ext | Man page Source code |
| fill_atlas_with_stats | Man page Source code |
| finalize_confound_settings | Man page Source code |
| finalize_pipeline_configuration | Man page Source code |
| fir1Bandpass | Man page Source code |
| fit_wi_model | Source code |
| fmri.design | Man page Source code |
| fmri.pipeline | Man page |
| fmri.pipeline-package | Man page |
| fmri.stimulus | Man page Source code |
| fmri_ts | Man page |
| fsl_generate_fsf_contrast_syntax | Man page Source code |
| fsl_generate_fsf_ev_syntax | Man page Source code |
| fsl_generate_fsf_lvl1_ev_syntax | Man page Source code |
| fsl_l1_model | Man page Source code |
| fsl_l2_model | Man page Source code |
| fsl_l3_model | Man page Source code |
| fwe_spec | Man page |
| gammapdf | Source code |
| generateRunMask | Source code |
| generate_feature | Man page Source code |
| generate_feature_armadillo | Man page Source code |
| generate_mask_diagnostics | Man page Source code |
| generate_motion_regressors | Man page Source code |
| generate_run_data_from_bids | Man page Source code |
| generate_subject_data_from_bids | Man page Source code |
| generate_trial_data_from_bids | Man page Source code |
| get_additional_regressors | Source code |
| get_beta_series | Source code |
| get_cluster_means | Source code |
| get_collin_events | Man page Source code |
| get_compute_environment | Source code |
| get_contrasts_from_spec | Man page Source code |
| get_design_files | Source code |
| get_dupe_rows | Source code |
| get_feat_files | Source code |
| get_feat_l3_inputs | Source code |
| get_feat_status | Man page Source code |
| get_fsl_l3_model_df | Source code |
| get_l1_config | Man page Source code |
| get_l1_confounds | Man page Source code |
| get_l1_cope_df | Source code |
| get_l2_config | Man page Source code |
| get_l2_cope_df | Source code |
| get_l3_config | Man page |
| get_l3_cope_df | Source code |
| get_medusa_compression_score | Man page Source code |
| get_medusa_interpolated_ts | Man page Source code |
| get_mr_abspath | Man page Source code |
| get_output_directory | Man page Source code |
| get_regressors_from_signal | Source code |
| get_tracked_job_status | Man page Source code |
| get_trial_set_from_signal | Source code |
| get_trial_subset_stats | Source code |
| get_ts_multipliers | Source code |
| get_value_df | Source code |
| get_wi_contrast_matrix | Source code |
| gfeat_stats_to_brik | Source code |
| hours_to_dhms | Man page |
| insert_df_sqlite | Man page Source code |
| insert_tracked_job | Man page Source code |
| interpolate_fmri_epochs | Man page Source code |
| local_job_status | Source code |
| lookup_dim | Man page |
| lookup_nifti_inputs | Man page Source code |
| lookup_nvoxels | Man page |
| lookup_run_volumes | Man page |
| meta_mixed_by | Man page Source code |
| mixed_by | Man page Source code |
| mobj_fit_lm | Man page |
| mobj_refit_lm | Man page |
| names_to_internal | Man page Source code |
| ol_mean_min_max | Man page Source code |
| ol_unique | Man page Source code |
| path_sanitize | Man page Source code |
| pca_motion | Man page Source code |
| place_dmat_on_time_grid | Man page Source code |
| populate_defaults | Man page |
| populate_event_data | Source code |
| populate_last_events | Man page Source code |
| populate_list_arg | Source code |
| propagate_spec_names | Source code |
| ptfce_spec | Man page |
| read_df_sqlite | Man page Source code |
| read_feat_dir | Man page Source code |
| read_feat_inputs | Man page Source code |
| read_gfeat_dir | Man page Source code |
| refresh_feat_status | Man page Source code |
| reset_tracking_sqlite_db | Man page Source code |
| respecify_l2_models_by_subject | Man page Source code |
| rle_dt | Man page |
| run_afni_command | Man page Source code |
| run_decon_alignment | Man page Source code |
| run_feat_sepjobs | Man page Source code |
| run_fsl_command | Man page Source code |
| run_glm_pipeline | Man page Source code |
| runmean | Man page Source code |
| sched_args_to_header | Man page Source code |
| setdiff_list_combn | Man page |
| setup_compute_environment | Man page Source code |
| setup_glm_pipeline | Man page Source code |
| setup_l1_models | Man page Source code |
| setup_l2_models | Man page Source code |
| setup_l3_models | Man page Source code |
| setup_output_locations | Source code |
| setup_parallel_settings | Source code |
| shift_dmat_timing | Source code |
| sigmoid | Man page Source code |
| signals_from_spec | Source code |
| simulate_null_3dttest | Man page |
| slurm_job_status | Source code |
| specify_contrasts | Man page Source code |
| spm_gamma_bf | Source code |
| spm_get_bf | Source code |
| spm_hrf | Source code |
| spm_orth | Source code |
| spm_sceptic_model | Source code |
| submit_sqlite_query | Man page Source code |
| submit_tracking_query | Man page Source code |
| summarize_contrasts | Man page Source code |
| summarize_l1_models | Source code |
| summarize_l1_signals | Source code |
| summary.bg_block_data | Man page Source code |
| summary.bg_subject_data | Man page Source code |
| summary.glm_pipeline_arguments | Man page Source code |
| summary.l1_model_set | Man page Source code |
| summary.l1_model_set_events | Man page Source code |
| summary.l1_model_set_models | Man page Source code |
| summary.l1_model_set_signals | Man page Source code |
| test_compute_environment | Source code |
| torque_job_status | Source code |
| truncate_runs | Man page Source code |
| update_df | Man page |
| update_tracked_job_status | Man page Source code |
| validate_alignments | Source code |
| validate_block_data | Man page Source code |
| validate_dhms | Man page |
| validate_input_data | Man page Source code |
| visualize_design_matrix | Man page Source code |
| voxelwise_deconvolution | Man page Source code |
| wait_for_job | Man page Source code |
