RnaSeqTutorial-volcanoPlot: Volcano plot
In UPSCb/RnaSeqTutorial: RNA-Seq Tutorial

Description Usage Arguments Details See Also Examples

Draws a Volcano plot, i.e. the differential expression log odds vs. expression log fold change between condition.

1	volcanoPlot(object, alpha = 0.01, log2FC = 0.5)

`object`	an object of class `DataFrame` having at least 2 columns named `log2FoldChange` and `padj`
`alpha`	the significance cutoff to be used when plotting, defaults to 10e-2.
`log2FC`	the log2 fold change used for plotting, defaults to 0.5

The function has been devised to draw a Volcano plot from a DESeq result object. The cutoffs have been devised from Schurch et al., RNA, 2016

DESeq package

## Not run: 
## TODO add an object after putting results in the data folder
## and use that for plotting the example
data(RST-DataFrame)
volcanoPlot(dataFrame)

## End(Not run)