Files in UPSCb/RnaSeqTutorial

RNA-Seq Tutorial

.gitignore

DESCRIPTION

NAMESPACE

NEWS

R/RnaSeqTutorial-package.R R/densityPlot.R R/extdata.R R/functionalGenomics.R R/gcFunction.R R/plot.multidensity.R R/plotMA.R R/plotMALSD.R R/volcanoPlot.R README.md

build/vignette.rds

external_data_store.txt

inst/CITATION

inst/doc/Chapters/01-Convention.html

inst/doc/Chapters/02-Introduction.html

inst/doc/Chapters/04-Preprocessing.html

inst/doc/RnaSeqTutorial.html

inst/doc/scripts/RnaSeqTutorial.R man/Ptrichocarpa_v3.0_210_synthetic_transcripts.Rd man/RnaSeqTutorial-densityPlot.Rd man/RnaSeqTutorial-deprecated.Rd man/RnaSeqTutorial-extdata.Rd man/RnaSeqTutorial-functionalGenomics.Rd man/RnaSeqTutorial-gcFunction.Rd man/RnaSeqTutorial-heatscatter.Rd man/RnaSeqTutorial-package.Rd man/RnaSeqTutorial-plotMA.Rd man/RnaSeqTutorial-plotmultidensity.Rd man/RnaSeqTutorial-volcanoPlot.Rd man/RnaSeqTutorial.Rd man/gAnnot.Rd

src/python/parseRnw.py

vignettes/Bibliography/References.bib

vignettes/Chapters/01-Convention.Rmd vignettes/Chapters/02-Introduction.Rmd vignettes/Chapters/04-Preprocessing.Rmd vignettes/Chapters/05-Pseudo-Alignment.Rmd vignettes/Chapters/12-R-Biological-QA.Rmd vignettes/Commons/13-Solution.Rmd vignettes/Commons/14-Acknowledgments.Rmd vignettes/Commons/15-Footnotes.Rmd vignettes/Commons/16-Images.Rmd vignettes/Commons/17-SessionInfo.Rmd vignettes/Commons/18-Appendix.Rmd vignettes/Freeze/03-R-Introduction.Rmd vignettes/Freeze/04-R-Annotations-Full-Version.Rmd vignettes/Freeze/05-Alignment.Rmd vignettes/Freeze/06-Prelude.Rmd vignettes/Freeze/07-Linux-Alignments.Rmd vignettes/Freeze/07-R-Alignments.Rmd vignettes/Freeze/08-Linux-R-Annotations.Rmd vignettes/Freeze/08-Visualisation.Rmd vignettes/Freeze/09-R-Interlude.Rmd vignettes/Freeze/10-Counting.Rmd vignettes/Freeze/11-R-Counts.Rmd vignettes/Freeze/13-R-Differential-Expression.Rmd vignettes/Freeze/14-R-Biological-QA-FG.Rmd vignettes/Freeze/15-R-Differential-Expression-FG.Rmd vignettes/Freeze/16-R-DE-practical.Rmd vignettes/Freeze/17-ShortReads.Rmd vignettes/Freeze/18-Reproducing-at-Home.Rmd vignettes/Freeze/Day2-1-Alignments.Rmd vignettes/Freeze/Day2-6-Variants.Rmd vignettes/Freeze/Day2-7-Differential-expression.Rmd

vignettes/Freeze/Dexseq.jpg

vignettes/Freeze/RPKMformula.png

vignettes/Freeze/RSQ-plot.png

vignettes/Freeze/age_vs_mol-biol.png

vignettes/Freeze/databaseTypes.pdf

vignettes/Freeze/gc-read.png

vignettes/Freeze/lattice.png

vignettes/Freeze/ranges-ir-plot.png

vignettes/Freeze/ranges-reduce-ir-plot.png

vignettes/Freeze/ranges-shift-ir-plot.png

vignettes/Images/count-modes.png

vignettes/Images/databaseTypes.png

vignettes/Images/example.png

vignettes/Images/logo.png

vignettes/Images/pipeline.png

vignettes/Images/theory.png

vignettes/Makefile

vignettes/RnaSeqTutorial.Rnw

vignettes/Templates/ChapterTemplate.Rmd vignettes/Templates/Tutorial.Rmd

vignettes/css/sock_style.css

vignettes/header.html

vignettes/js/chart.js

vignettes/js/cryptomd5.js

vignettes/js/index.js

vignettes/js/jquery.js

vignettes/js/sock_fun.js

vignettes/js/socketio.js

vignettes/questMaster.R

vignettes/scripts/printoutCleanup.pl

UPSCb/RnaSeqTutorial documentation built on Nov. 24, 2020, 12:40 a.m.