pmPlotSignature: Plot mutation signatures from pmsignature output

In USCbiostats/HiLDA: Conducting statistical inference on comparing the mutational exposures of mutational signatures by using hierarchical latent Dirichlet allocation

Description

Plot mutation signatures from pmsignature output

Usage

pmPlotSignature(inputParam, sigOrder = NULL, colorList = NULL, ...)

Arguments

inputParam	a estimatedParameters S4 class output by the pmsignature.
sigOrder	the order of signatures if needed (default: NULL).
colorList	a list of color to highlight the signatures (default: NULL).
...	additional arguments passed on to visPMS.

Value

a plot object containing all mutational signatures

Examples

load(system.file("extdata/sample.rdata", package="HiLDA"))
Param <- pmgetSignature(G, K = 3)
pmPlotSignature(Param)

USCbiostats/HiLDA documentation built on Oct. 15, 2021, 10:22 a.m.